Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2824 ATGGAAttctatGTTTTTATCAATGGAGGGATATTAATTGGGTACATATCGAACTATGCATTTTCGAAGGTGACACTAAAGTTGGGTTGGCGAGTGATGCTTGGAATCGGTGCAATTCCTTCAGTACTCCTCATGGTGGGAGTGTTGGTGATGCCTGAGTCTCCCCGATGGCTTGTGATGAGGGGTCGTTTGGGAGATGCAATAAAAGTCCTTAACAAAATCTCCGAAACCAAGGAAGAGGCTCAGCAAAGGCTAGCCGACATCAAACAAGCTGCAGGGATCCCCGAGAATTGCAACGACGACGTCGTTCAGGTGACCAAGCAAAACACCGGTGAGGGTGTATGGAAAGAGTTGTTCCTTTATCCAACGCCCATGGTTCGTCACATCTTAATCGCTGGCCTCGGGATTCACTTCTTCCAACAAGCGTCAGGCGTAGACACCGTCGTTTTGTACAGCCCTAGGATCTTCGAAAAGGTTGGGATCACAAGCGACAAAGACAAGCTTCTCGCAACTGTGGCCGTTGGATTCATCAAGACTGTCTTCATATTGGTAGCTACATTTATGTTGGACCGTGTGGGTCGTCGTCCATTGTTATTATCTAGTGTCGGGGGCATGGTGCTCTCGCTTTTCACGCTCGCCATCAGCCTCACCATCATTGATCACTCGAAGAAGAAACTAATGTGGGCTGTTGGATTAAGCATAACCATGGTTTTGTCCTACGTGGCCACGTTCTCGATTGGTGCAGGACCTATCACGGGGGTCTACAACTCTGAAATCTATCCGTTGAGGCTACGGGCACAGGGTGTGGCCGCGGGGGTTATGGTGAATAGGATCACAAGTGGGGTTATCTCAATGACTTTTCTGTCCCTCACGAAAGCGATCACCATTGGTGGAGCTTTCTTCCTTTATTGTGGGATTGCTACTGCTGGGTGGATATTCTTTTACATTGTGCTTCCTGAAACACGGGGGAAAACGCTCGAAGAAATGGAAGGGTCTTTTGGTAAATTTTGGGCAAAATCTGACAATGCTAATGGCCAAATGGCCTAA 1047 0.4776 MEFYVFINGGILIGYISNYAFSKVTLKLGWRVMLGIGAIPSVLLMVGVLVMPESPRWLVMRGRLGDAIKVLNKISETKEEAQQRLADIKQAAGIPENCNDDVVQVTKQNTGEGVWKELFLYPTPMVRHILIAGLGIHFFQQASGVDTVVLYSPRIFEKVGITSDKDKLLATVAVGFIKTVFILVATFMLDRVGRRPLLLSSVGGMVLSLFTLAISLTIIDHSKKKLMWAVGLSITMVLSYVATFSIGAGPITGVYNSEIYPLRLRAQGVAAGVMVNRITSGVISMTFLSLTKAITIGGAFFLYCGIATAGWIFFYIVLPETRGKTLEEMEGSFGKFWAKSDNANGQMA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2824 348 Coils Coil 71 91 - -
Ssu3g2824 348 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 5 345 IPR045262 GO:0015144
Ssu3g2824 348 SUPERFAMILY MFS general substrate transporter 3 330 IPR036259 -
Ssu3g2824 348 Pfam Sugar (and other) transporter 4 331 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu3g2824 348 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 322 IPR020846 GO:0022857
Ssu3g2824 348 Gene3D MFS general substrate transporter like domains 2 335 IPR036259 -
Ssu3g2824 348 PANTHER SUGAR TRANSPORTER 5 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2824 Ssu-Chr3 82655724 82656919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2824 5 342 Organic Solute Cotransporters AT3G18830 65.882 1.37e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2824 - - gmx:547958 567