Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2823 ATGCAGGTTTTTGTCAATGGAGGGATATTACTTGGATACATATCAAACTATGCGTTTTCGAAGGTGACACTAAAGCTGGGTTGGCGAATGATGCTTGGAATTGGTGCAATTCCTTCGGTACTCTTCATGGTGGGAGTGTTGGCGATGCCTGAGTCCCCACGATGGCTTGTGATGAGGGGTCGCTTGGGAGATGCAACAAAAGTCCTTAACAAAATCTCTGACACCAAGGAAGAGGCTCAGCAAAGGCTAGCTGACATCAAACAAGCCGCAGGGATTCCCGAGAATTGCAACGACGACATTGTTCAAGTGACTAAGCGAAACACTGGTGAGGGTGTATGGAAAGAGCTGTTCCTTTATCCAACGCCAACAGTACGTCACATCTTAATTGCTGCCCTTGGGATTCACTTCTTCCAACAAGCGTCGGGCGTAGACGCCGTCGTTTTGTACAGCCCTAGGATCTTCGAAAAGGCTGGGATCACGAGCGACAAGGACAAGCTTCTCGCAACCGTGGCTGTTGGATTCGTCAAGACCGGGTTCATATTGGTCGCTACGTTTATTGTAGACCGCGTGGGTCGTCGTCCGTTGTTATTGTCTAGTGTCGGGGGCATGGTGCTCTCGCTTCTCACACTCGCCATCAGCCTCACCATCATTGATCACTCGGAGAAGAAACTAATATGGGCCGTTGGATTGAGCATAACCACGGTGTTGTCCTACATGGCCACTTTCTCGATTGGTGCAGGACCCATCACGTGGGTCTACAGCTCCGAAATCTATCCGTTGAGGCTACGGGCGCAGGGTGCAGCCGCAGGGGTTGTGGTGAATAGGATCACAAGTGGGGTTATCTCAATGACTTTTCTGTCCCTCATGAAAGCGATCACCATTGGTGGAGCTTTCTTCCTTTATTGTGGGATTGCCACTATTGGGTGGATATTCTTTTACATCGTGCTTCCTGAAACACGGGGGAAAACGCTCGAAGAAATGGAAGGGTCTTTTGGTAACTTTCAGGCCAAATCTAACAATGCTAATGGCCAAGTGCCCCAAGTCCAGCTGGGGACCAATGTCCAAACTTAG 1071 0.4967 MQVFVNGGILLGYISNYAFSKVTLKLGWRMMLGIGAIPSVLFMVGVLAMPESPRWLVMRGRLGDATKVLNKISDTKEEAQQRLADIKQAAGIPENCNDDIVQVTKRNTGEGVWKELFLYPTPTVRHILIAALGIHFFQQASGVDAVVLYSPRIFEKAGITSDKDKLLATVAVGFVKTGFILVATFIVDRVGRRPLLLSSVGGMVLSLLTLAISLTIIDHSEKKLIWAVGLSITTVLSYMATFSIGAGPITWVYSSEIYPLRLRAQGAAAGVVVNRITSGVISMTFLSLMKAITIGGAFFLYCGIATIGWIFFYIVLPETRGKTLEEMEGSFGNFQAKSNNANGQVPQVQLGTNVQT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2823 356 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 2 344 IPR045262 GO:0015144
Ssu3g2823 356 SUPERFAMILY MFS general substrate transporter 2 328 IPR036259 -
Ssu3g2823 356 TIGRFAM SP: MFS transporter, sugar porter (SP) family 2 327 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu3g2823 356 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 320 IPR020846 GO:0022857
Ssu3g2823 356 Coils Coil 62 89 - -
Ssu3g2823 356 PANTHER SUGAR TRANSPORTER 2 344 - -
Ssu3g2823 356 Pfam Sugar (and other) transporter 2 329 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu3g2823 356 Gene3D MFS general substrate transporter like domains 1 334 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2823 Ssu-Chr3 82634492 82638353 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2823 2 355 Organic Solute Cotransporters AT3G18830 64.463 3.63e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2823 - - gmx:547958 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2823 3 82634492 82638353 Ssu3g2823 3 82634492 82638353 ECH