Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2808 ATGAAGGCTATGAGCGCCATAAACACCTCAAATCCATGTCTTCCCAAAACCCATTTCCTCAAAGTCCCTGTCTTCTTGAGATTCAAGCCATTCTCATACAACACCCATCTCTGTGCTGCAAAGAGAACTCACACACATTCTCTTCCATTCACCATCAACTGCAAGCTGAAAAACTCTcaagacataaaaaacaaaGGGAAGAGCGTGTCACAGAAGATTGTCTTATCAGAAGCGTCCCCTCCACAACTCACAGAGGGTGATGACATCAACGGTGAGAGTGGGGATGTTCCAAAAAGCTCAAAGAAGAAGGGAGGAGGCCTTTCTGGGGTGGCCAAGTTCTTGAGAAGAAAGACGTTGCAGATTCTCTCTAATTTGCCGTTGGCTATTGGGGAAATGTTCGCCGTTGCTTCTTTGATGGCTCTGGGAACAATTATTGATCAAGGTGAAGCCCCTGACTTCTATTTCCAGAAATACCCTGAAGATCATCCCGTGTTTGGATTTTTTACTTGGAGATGGATTCTCCCCCTTGGTTTTGATCACATGTTTTCATCCCCTATATTTCTTGGAGTGTTGGCTCTCCTGGGTGCATCCCTCATGGCCTGCACTTACACAACTCAGCTCCCCCTCATCAAGGTTTCAAGAAGATGGTCATTTTTGCACTCTGCGGAGGCCATACATAAGCAGGAATTTTCAGAATCGTTGCCAAGAGCATCAATCCAAGATGTTGGTACTATATTGATGGGAGCTGGATACGAGGTATTCTTGAAAGGACCTTCTTTATATGCTTTTAAAGGGCTTGCAGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCACTGCTACTGATAATGGCTGGAGGGACTCTTAGTGCTGCTGGGAGCTTCAGAGGTTCAGTCACGGTGCCCCAGGGGCTGAATTTTGTTGTAGGTGATGTTCTGGCTCCTTCTGGGTTTTTCTCCTCTCCAACTGAGGCTTTTAATACAGAGATTCATGTCAACAGATTCTACatggattattatgagagtGGAGAGGTCTCACAGTTCCACACTGATCTTTCCCTTCGTAACATGGACGGGAAAGAAGTAATCAGGAAAACAATCAGTGTAAATGATCCTTTAAGGTATGGTGGTATCACCATATATCAAACAGATTGGAGTATTTCGGCTCTGCAAATTCTTAAGGACAATGAAGGACCCTATAACTTGGCTATGGCACCTCTACAGATCAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCGGTTGGAGATATTAACTCTCCTGACGTTAAGGGAAtATCTATGCTTGCTCGTGATCTGCAGTCAATTGTCCTATATGATAAGGAAGGAAAATTTGCGGGAGTTAGACGGCCTAATTCAAAGCTTCCAATCAATATTGATGGCTCAGAAATTGTCATTGTTGATGCAATAGGAAGTAGTGGCTTGGACTTGAAGACTGACCCAGGTGTACCAGTTGTTTATGCTGGATTTGGTGCTCTAATGATAACTACTTGCATCAGCTATTTGTCTCATTCACAGATATGGGCCTTACAAGATGGGACAACAGTCATCATTGGAGGGAAGACTAACAGAGCAAAGCTGGAGTTTCCAGAGGAAATGAACCGCTTACTTGATAATGTCCCTGAAGTAGTTGAATCAACTCTATCTAAGCAAGCTGATAGCATTAGTGGTTAG 1692 0.4326 MKAMSAINTSNPCLPKTHFLKVPVFLRFKPFSYNTHLCAAKRTHTHSLPFTINCKLKNSQDIKNKGKSVSQKIVLSEASPPQLTEGDDINGESGDVPKSSKKKGGGLSGVAKFLRRKTLQILSNLPLAIGEMFAVASLMALGTIIDQGEAPDFYFQKYPEDHPVFGFFTWRWILPLGFDHMFSSPIFLGVLALLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIHKQEFSESLPRASIQDVGTILMGAGYEVFLKGPSLYAFKGLAGRLAPVGVHIALLLIMAGGTLSAAGSFRGSVTVPQGLNFVVGDVLAPSGFFSSPTEAFNTEIHVNRFYMDYYESGEVSQFHTDLSLRNMDGKEVIRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVIVDAIGSSGLDLKTDPGVPVVYAGFGALMITTCISYLSHSQIWALQDGTTVIIGGKTNRAKLEFPEEMNRLLDNVPEVVESTLSKQADSISG 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2808 563 PANTHER CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC 83 552 IPR023494 -
Ssu3g2808 563 Hamap Cytochrome c biogenesis protein Ccs1 [ccs1]. 115 544 IPR023494 -
Ssu3g2808 563 Pfam ResB-like family 428 539 IPR007816 -
Ssu3g2808 563 Pfam ResB-like family 127 391 IPR007816 -
Ssu3g2808 563 MobiDBLite consensus disorder prediction 80 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2808 Ssu-Chr3 82405873 82410025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2808 21 558 Miscellaneous Gene Families AT1G49380 68.991 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2808 K07399 - gmx:100807003 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2808 3 82405873 82410025 Ssu3g2808 3 82405873 82410025 ECH