Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2807 ATGGCTCTCTCTGCGCATCTTTGCCGTCTCCCTGCGACACGCGCCGACATCGCTATGCCGGAGAGTCTCACCAGAATCCGGTGCCGGAAACCTCTCTCCGTCCGATGCTCCGGCGATTCCTCTTCCGCGGCCGTGGATTCCGAGTTCGATCCGAAGGTGTTTCGGAAGAACCTTACTCGGAGCAAGAACTATAACCGTAAAGGCTTTGGCTACAAGGAGGAGACCCTCCAACTGATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTACTGTCACAGTGAAGCTGGCTGAAGCCTATGGATTCTGTTGGGGAGTTGAGAGGGCCGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACCATATGGCTTACCAATGAAATCATCCACAACCCCACTGTTAACAAGCGGCTAGAGGAGATGAAAGTGCAGAATATTCCTCTGGAGGAAGGTACAAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATATTGCCGGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGTGAGAAAAATGTTCAGATCGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCTATAATTCATGGTAAATATGCCCATGAGGAAACTGTGGCAACTGCTTCTTTTGCTGGAAAGTATGTAATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGTGACTATATTCTTGGTGGTGAATTCAATGGATCCAGTTCAACCAGAGAAGCATTTTTAGAGaaatttaaatttgcaGTTTCTGAGGGCTTTGATCCAGACAGGGACCTGATAAAAGTTGGCATCGCAAATCAGACAACGATGCTCAAGGGAGAGACAGAAGAGAttgGGAGACTACTGGAGAGGACTATGATGCGCAAATTTGGTGTGGAGAACATCAATGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTACAAACTGGTGGAGGAAGATCTGGATCTTATGTTAGTAGTTGGTGGATGGAACTCTAGCAATACATCACACTTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAACCATGGAGAGCTTGTGGAGAAAGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGATGCGCTTATCAAGATTTTTGACTTGAAACGGGAAGAAGCGATGCAACTTGTGTAA 1377 0.4466 MALSAHLCRLPATRADIAMPESLTRIRCRKPLSVRCSGDSSSAAVDSEFDPKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVNKRLEEMKVQNIPLEEGTKQFEVVNKGDVVILPAFGAAVEEMLTLSEKNVQIVDTTCPWVAKVWNTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYVIVKNMAEAEYVCDYILGGEFNGSSSTREAFLEKFKFAVSEGFDPDRDLIKVGIANQTTMLKGETEEIGRLLERTMMRKFGVENINEHFISFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALIKIFDLKREEAMQLV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2807 458 Pfam LytB protein 105 443 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Ssu3g2807 458 Gene3D - 205 338 - -
Ssu3g2807 458 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 3 456 - -
Ssu3g2807 458 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 103 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Ssu3g2807 458 Gene3D - 339 457 - -
Ssu3g2807 458 CDD lytB_ispH 105 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Ssu3g2807 458 Gene3D - 114 204 - -
Ssu3g2807 458 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 105 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2807 K03527 - gmx:100818067 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2807 3 82396855 82404926 Ssu3g2807 3 82396855 82404926 ECH