Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2795 ATGGCTGTTGGAATCCTTAAACAGTTTCCCCAAACTGTGAGACCGAGACCTTGGTCTCTGTTCTTGTGTTCCTCTTGTTCAAACGATGCTTCCCAGAGTTTAGTAGCAAACGTTGTTTCCATCCTGACCCATCACCGTTCCAAGTCCCGTTGGAGCAATCTCCGTTCGGCGTGCCCCAACGGCATCGCCCCCGTTGAGTTTTCCGAAATTACCCTCCACCTCAAGAACAAACCGCAACTCGCCCTCCGCTTCTTCCTCTGGACCAAATCCCAATCCGTCTGCCACCACAACCTCGCCTCTTACTCCTCCGTCATCCACCTCCTCGCACGTGCGCGACTCACCTCACACGCTTACCACCTAATCCGAACGGCCATTCGCGCTTCCGACCAAAATTGTCGTTTCACCTCGCCGCCTTTAGAGCTCTTCGAAACCCTCGTCAAGACCTACCGAGATTCTGGGTCCGCCCCCTTCGTCTTCGATTTGTTGATCAAGGCCTGTTTGGATTCAAAGAAACTTGACCCTTCTATTGAGATCGTTAGAATGTTACTCTCTCGCGGGATTAGCCCTAAAGTTAGCACCTTGAATTCTTTGATTTCTAGGGTTTGCAGAAGTCGAGGGGTGGATGCAGGGTATGCAATTTACCGCGAGTTCTTTCGGTTGGATGaggaaaaaatggaaatttcgAGAAGGGGTTTTGGTTTTAGAGTCACCCCCAATGTCCATACTTATAATGAATTAATGTTATGCTGTTACCGGCATGGTTTGGTGGAAAGGGCAGAGGAGATTTGGCATGAAATGATGTGTAAACCCAATGCTTATAGCTATAGTGTGTTGATGGCTGCTTTTTGTGAAGAAGGGAGGATGGGGGATGCAGAGAAGTTGTGGGAAGAAATGAGGAATGAGGAAATGGAACCTGATGTTGTTAGTTATAATACTATTATTGGTGGGTTTTGCAAGATTGGAGATGTTGGAAGGGCTGAGGAGTTTTTCAGGGAAATGGCATTGGCTGGTGTTGGCACCACTGCTTCAACTTATGAGCATCTTGTCAAGGTATATTGCAATGTTGGGGATGTTGATTCGGCTGTTCTTGTTTATAGGGATATGTCTAGGAGGGATTTAAGGCCGGATGCTTCAACCCTTGACGTGATGGTTAGGTTGCTTTGTGGTAAGGGTAGGGTTCAGGAAGGTCTGGAGTTTGTGAGGTGTGCAGTTGGTAAATTTGACTTGCTTCCAAGGGAGAAGAGTTATGAGGCCTTGGTAAAGGGGTTGTGTTTTGAGGGGAGGATGGAAGAAGCGCTGAAGGTTCAGGCAGAGATGGTAGGAAAAGGGTTTCAACCGAATTCTGAAATATATGGTGCTTTTGTTGATGGATACATTAGACAAGGGAACGAGGAAATGGCAGAAGCTTTGAGGAAAGAAATGCTCCAAACCCAGACACAGAGCTAA 1446 0.4682 MAVGILKQFPQTVRPRPWSLFLCSSCSNDASQSLVANVVSILTHHRSKSRWSNLRSACPNGIAPVEFSEITLHLKNKPQLALRFFLWTKSQSVCHHNLASYSSVIHLLARARLTSHAYHLIRTAIRASDQNCRFTSPPLELFETLVKTYRDSGSAPFVFDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCRSRGVDAGYAIYREFFRLDEEKMEISRRGFGFRVTPNVHTYNELMLCCYRHGLVERAEEIWHEMMCKPNAYSYSVLMAAFCEEGRMGDAEKLWEEMRNEEMEPDVVSYNTIIGGFCKIGDVGRAEEFFREMALAGVGTTASTYEHLVKVYCNVGDVDSAVLVYRDMSRRDLRPDASTLDVMVRLLCGKGRVQEGLEFVRCAVGKFDLLPREKSYEALVKGLCFEGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYIRQGNEEMAEALRKEMLQTQTQS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2795 481 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Ssu3g2795 481 TIGRFAM PPR: pentatricopeptide repeat domain 308 337 IPR002885 -
Ssu3g2795 481 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Ssu3g2795 481 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Ssu3g2795 481 TIGRFAM PPR: pentatricopeptide repeat domain 241 270 IPR002885 -
Ssu3g2795 481 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 18 479 - -
Ssu3g2795 481 Gene3D Tetratricopeptide repeat domain 219 267 IPR011990 GO:0005515
Ssu3g2795 481 Gene3D Tetratricopeptide repeat domain 268 335 IPR011990 GO:0005515
Ssu3g2795 481 Gene3D Tetratricopeptide repeat domain 402 480 IPR011990 GO:0005515
Ssu3g2795 481 Gene3D Tetratricopeptide repeat domain 70 218 IPR011990 GO:0005515
Ssu3g2795 481 Gene3D Tetratricopeptide repeat domain 336 401 IPR011990 GO:0005515
Ssu3g2795 481 Pfam PPR repeat 303 333 IPR002885 -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Ssu3g2795 481 Pfam PPR repeat 450 475 IPR002885 -
Ssu3g2795 481 Pfam PPR repeat 415 444 IPR002885 -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 269 IPR002885 -
Ssu3g2795 481 Pfam PPR repeat family 238 283 IPR002885 -
Ssu3g2795 481 Pfam PPR repeat family 343 388 IPR002885 -
Ssu3g2795 481 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 18 479 - -
Ssu3g2795 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2795 70 480 Glycosyltransferase AT1G05670 25.738 7.39e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2795 - - gmx:100809831 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2795 3 82217218 82218663 Ssu3g2795 3 82217218 82218663 ECH