Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2794 ATGGATGAATTACCTGGCTCCGTGGGCACCAGCGCCAGCTTCAGTCTGAGATTGGGCCAGATCATGTTCTCTTCTGCTTCCCTTCTCTTTATGTCTCTCGGGGTTGAATTCTACAGCTACACGGCCTTCTgCTATTTGGTGACAATTATGGGGTTGGTCATACCATGGAGTTTCACATTAGCATTGGTAGATGGATATTCTGTTCTGGTCAAATGCCCCATTCGTCAACCGGGAATATTGTTGATTATTGTTGTGGGAGATTGGGTATTATCAACCCTCACACTAGCGGCAGCTTGCTCAACAGCTAGTGTTGTGGATCTCCTTCTCAACACCCACGGGTCTTTTTGCCCTCCAAAGTTTTGTGGCAGGAGCAAAGTACATCTTGAGTCCAATGAATGTCATGCTCAGCTTCATAGCAGATACGTGAGTGTAAAATGTCAAGAGTTTCATGACGAAGGCCACACTGCAGCTCTGCCGTTTGCTAATTCTCCTCACAGTGGAAGGGTTGGGCATGAACCATGTATTTCACCATGA 534 0.4663 MDELPGSVGTSASFSLRLGQIMFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGDWVLSTLTLAAACSTASVVDLLLNTHGSFCPPKFCGRSKVHLESNECHAQLHSRYVSVKCQEFHDEGHTAALPFANSPHSGRVGHEPCISP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2794 177 Pfam Casparian strip membrane protein domain 9 123 IPR006702 -
Ssu3g2794 177 PANTHER CASP-LIKE PROTEIN 5B3 1 127 IPR045009 -
Ssu3g2794 177 PANTHER CASP-LIKE PROTEIN 5C3 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2794 Ssu-Chr3 82214704 82216626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2794 - - gmx:100810360 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2794 3 82214704 82216626 Ssu3g2794 3 82214704 82216626 ECH