Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2790 ATGTGGAAGAGAATGGATTTTCAAGAAGAAGCAGTTCAATTGATCAACTCTGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCTTAGGCTTTGGAGCTTCTCTTTTCGGATTGATTTGTGCCATTGCTGCCATTTATCTGTTGATTTTGGATCGTACAAACTGGAGGACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGCCGTCTTCAGGGGAGAGATTGGAAAATGGATTGCTTTTATTGCTGTTGTATTACGCCTTTTCATTCCGAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTTTGATTCTTCTTATCGTTGTAGCTCCTAGTCTATTTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAGCACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACCAAAGTCCACGGCATATCAAATTCCATTGGCATAATAATTCTGTTGGTCTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG 597 0.4255 MWKRMDFQEEAVQLINSDFRDLSLAANRLAHHAIKLGGLGFGASLFGLICAIAAIYLLILDRTNWRTNILTALLIPYIFFSLPSLIFAVFRGEIGKWIAFIAVVLRLFIPRHFPDWLELPGALILLIVVAPSLFASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKVHGISNSIGIIILLVYPIWALVVILF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2790 198 Pfam Cold acclimation protein WCOR413 8 185 IPR008892 GO:0016021
Ssu3g2790 198 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 2 197 IPR008892 GO:0016021
Ssu3g2790 198 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 2 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2790 Ssu-Chr3 82186987 82189139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2790 - - gmx:100811430 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2790 3 82186987 82189139 Ssu3g2790 3 82186987 82189139 ECH