Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2786 ATGACAAACGCAAACCGTGGCACAATGTTAGTAGAGCGAAATACAAACACCTTGCACAGACCCAAATTCGGAGCCCTATTGCACTCCGATACGACGCCGCTCTACACCTCCCACCACGACGACGAGGACTTCTCCCATAACCGCCACAGCAACGCCAGCCCCAGCCCCAGAAACTACGCCGATAGCAGCACCACAAGCAGCAACAATGCCTCTCCCAACACCATGTCCCCATGGAACAATCAAGCTCCTTCCTCTCCTTTCAACAAGTCTCCATGGCTGTTACCCTCATCACCGGCGTTAAACCtcttccaccaccaccaccaccaccaccacgacgATAACTGCATCCCCGAAAACGGCCTCGTCGGATCCCTCGTTCGCGAAGAGGGTCACATATACTCCTTGGCAGTTTCCGGGGACTTGTTATACACTGGCTCCGACAGCAAGAACATAAGGGTGTGGAAGGATCTAAAAGACTTCACGGGTTTCAAATCAAGCAGTGGTTTAGTCAAGACCATAGTAATCTCCGGCGGGAAAATCTTCACCGGCCACCAAGACGGGAAGATCAGAGTGTGGAAGGTTTCGTCGAAAAATCCCGCCAACCATAAACGCGTGGGAAGCTTGCCCACGTTCAAAGAGTACGTGAAGAGTTCGATGAACCCGAAGAACTACGTGGAGGTTCGGCGGCGCCGAAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGCCTCGACGAGGAGGGAGGGCTGTTGTACTCGGGCTCGTGGGACAAAACGCTCAAGGGCGGTGGAGGGGAAGAAGCCGAAGCACGTGTTGGACCGGGTTTTGCTGAAGCAGGAGAACGCCGTCACGGCCCTGGCGGTGAACCGTTTGGCCACGGTGGTTTATTGCGGCTCCTCCGACGGGTTGGTGAACTTCTGGGAGCGCGACCAGAAGGGTGGGCTCTCACACGGCGGCGTTTTGAAGGGGCACAAGCTCGCCGTGCTCTGCCTCGCCGCCGCCGGGAACCTCGTGTTCAGCGGCTCCGCGGATAA 1044 0.5479 MTNANRGTMLVERNTNTLHRPKFGALLHSDTTPLYTSHHDDEDFSHNRHSNASPSPRNYADSSTTSSNNASPNTMSPWNNQAPSSPFNKSPWLLPSSPALNLFHHHHHHHHDDNCIPENGLVGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKDLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPANHKRVGSLPTFKEYVKSSMNPKNYVEVRRRRNAVKVKHFDAVSSLSLDEEGGLLYSGSWDKTLKGGGGEEAEARVGPGFAEAGERRHGPGGEPFGHGGLLRLLRRVGELLGARPEGWALTRRRFEGAQARRALPRRRREPRVQRLRG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2786 347 Pfam WD domain, G-beta repeat 129 155 IPR001680 GO:0005515
Ssu3g2786 347 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 264 IPR045182 -
Ssu3g2786 347 MobiDBLite consensus disorder prediction 49 90 - -
Ssu3g2786 347 SMART WD40_4 118 155 IPR001680 GO:0005515
Ssu3g2786 347 SMART WD40_4 156 193 IPR001680 GO:0005515
Ssu3g2786 347 SMART WD40_4 232 267 IPR001680 GO:0005515
Ssu3g2786 347 Gene3D - 106 264 IPR015943 GO:0005515
Ssu3g2786 347 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 264 - -
Ssu3g2786 347 SUPERFAMILY WD40 repeat-like 129 264 IPR036322 GO:0005515
Ssu3g2786 347 MobiDBLite consensus disorder prediction 37 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2786 Ssu-Chr3 82134164 82135341 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2786 - - gmx:100807706 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2786 3 82134164 82135341 Ssu3g2786 3 82134164 82135341 ECH