Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2764 ATGGCCGTCAACGACGCCGATCAATCCAACAAGCCTCACAGGACTCGTCAATCGGGTGCGAAATCCGACAAGAAGAAGACCGAGAAGAAGCAGAAGCAGAAGCCCGATGGCGGAGGAGACGATCCGAAAAAGCAAAACCCTAAGGCATTCGCCTTTTCCTCCTCCAACAAAGCCAAGCGGTTGCAATCACGCGCCGTCGAGAAAGAGCAGCGCCGCCTTCACGTTCCCGTCATCGACCGCTCTTACGGCGAGCCCGCTCCATACGTCGTCGTGGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATAAAGTCTTTGGTTAAGCATTACACGAAGCATAAGTTTGCCCGATGTTCGAGGTCCAATTACTATCGTGTCAGGCGGTTGCAGTTTGTGGAATGCCCGAATGATATCAACGGCATGATAGATGCGGCAAAGTTTGCAGATCTAGCACTTCTTCTTATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTTAATATCTTGCAAGTTCATGGATTCCCGAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTCAAGGATGTGAAAAAGTTGAGGAAAACAAAACAACGACTCAAACACCGGTTTTGGACTGAAATATATGATGGTGCTAAACTATTTTACTTATCAGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCCTATGTTTTGGTAGATCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGctgtaatttaaaaaagggaaataagGTGCACATAGCAGGAGTAGGTGATTATAGTTTGGCTAGTATTACTGTTTTACCTGATCCTTGTCCTCTTCCGTCTGCTGCAAAAAAGAAAGGACTGCGtgataaggaaaaattattctATGCTCCCATGTCTGGCCTTGGGGATCTTTTGTATGACAAAGATGCtgtatacataaatattaatgacCACCTTATTCAATTCTCAAAAGTTGATAATGAAAACTCTGCTATGACAAACAAAGGAAAGGACAGAGATGTAGGGGTGGATTTGGTGAAATCACTACAGAATACCAAATATTCAATCAATGAAAAACTAGAGAACAGCTTTATCAATCTTTTTGGTCAAAAGTCAAAAGTGTTATCAGAAGCTCTAACTGATGCACATGGCACAAACAAGGATGTAGAACAGAATGACAAAACAGAAGCTTTGGATAAATATCAGCCTGGGGCCTTCATAATTGATGAAGATAATAACAAAATGGACTTGGATGGTTCAGAATCATCTGGTCAGGATGAAGATGACGCAATGACAGACAGCGAAGCCTCTGGTCCTGATGTCGAAGACGAAGATGCACCAAATAGTAATGCTACGATTGGAGATCACTTGCAAGAACATATCGAGTTTCATGATGGAAGACGAAGGCGAAGAGCAATATTTGGAAATGATGTTGAGCAAAGTGATTTGATGGATGCAGAAGGAGATGAGGATGGTGCTGCCAGTGATGATGTAGAACCTTCTGATTCAGAATCTTcagaagaggaggaggaagatgACAATGATAATGATGACACAAATGAAGATGGCATGGGTAATGTTTCCAAGTGGAAAGAGACTTTGGCAGAAAAAACTCTCTCACAGAAAACTCCTAGTTTGATGCAACTTGTGTATGGGGAATCTACTATTATTTCAACCACTATAAACAGAGAAAATGATAATAGTGGGGGTGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAACATGAGAGATGGATTGGGTGATGATGGAATGGTCAACACTGAGGATTGTTCCAAATGTACACAATTTGTGGATGAGAGATGGGATGAGAAAGATAATGAGGAGATTCGCAACCGATTTGTGTCTGGCAATTTGGCAAAAGCTGCACTCAGAAATGCATTACCAACAGCTAATACTGAAGAGGAAAATGATGATGTCTATGGTGACTTTGAAGATTTGGAAACAGGAGAAAAACATGAGGATTATCAGACAGATGCTTTTGCAGCAACAACACACAAGGGAGATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCTTCGCgccaaatttgattctcaaTATCCTTTTTTCTCTGTACATATACTTAAGGAAGATACTGGTAATGAAAATGAAGGCAAGTTCCATCGTGGTCAAGCTACTGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAACTCCAGAAACAAATGAATATAGCTGAACTCAATGATCTTGATGAGGCTACCCGATTGGAGATAGAAGGCTTCCGAACAGGGACATACCTAAGATTGGAGGTTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGGGGGGTTGGTATAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGACCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATAGCAATGGAAGGCATCGTATGCTAAAATACACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCCGTTCAGAATTTATCAAACTATCAGGCAACATTTAGGATTACTGCAACGGCATTTGTACTCGAGTTTAATCATGCATCAAGGATGGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGGACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAATCAACCAAAAAGGAAGGGTGGACAAACCAAAGAAGGAATTGCTAGGTGCACATTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAATTCTATAATCCATTGACAACAGCATTGCAGCCTCGTGACAAGACCTGGAAAGGAATGAGAACTGTCGCAGAATTGAGAAGAGAGCATAATCTTCCTATTCCTGTAAATAAAGATTCACTTTACAAGaaaattgaaagaaaaccTAGAAAGTTCAATCCATTGGTGATTCCGAAGTCTCTACAAGCAAGTCTTCCCTTTGCATCAAAACCCAAGGATATACCCAAGCGAAAAAAGCCGTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCACTTGTTCAACACCTCCAGTTAATAAATAATGAGAAGATAAAAAAGCGAAAGCTTAAGGAAGAGAATAAGAGGAAAGTACTTGAAGCAGAGCGAGCAAAAGATGAGCAGTTGGTGAGAAAGCGCCGGAGAGAGGAAAGACGAGACAAGTACCGGGCGCAAGACAAGCAGAATAAGAAAATTCGGAGAGCAGAGGTTTGA 3651 0.41 MAVNDADQSNKPHRTRQSGAKSDKKKTEKKQKQKPDGGGDDPKKQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHVPVIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHKFARCSRSNYYRVRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLASITVLPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLIQFSKVDNENSAMTNKGKDRDVGVDLVKSLQNTKYSINEKLENSFINLFGQKSKVLSEALTDAHGTNKDVEQNDKTEALDKYQPGAFIIDEDNNKMDLDGSESSGQDEDDAMTDSEASGPDVEDEDAPNSNATIGDHLQEHIEFHDGRRRRRAIFGNDVEQSDLMDAEGDEDGAASDDVEPSDSESSEEEEEDDNDNDDTNEDGMGNVSKWKETLAEKTLSQKTPSLMQLVYGESTIISTTINRENDNSGGEESDDDFFKPIEEVKKQNMRDGLGDDGMVNTEDCSKCTQFVDERWDEKDNEEIRNRFVSGNLAKAALRNALPTANTEEENDDVYGDFEDLETGEKHEDYQTDAFAATTHKGDDLEAEERRLKKLALRAKFDSQYPFFSVHILKEDTGNENEGKFHRGQATESSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFRTGTYLRLEVHDVPCEMVEYFDPYHPILVGGVGIGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLSNYQATFRITATAFVLEFNHASRMVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDKTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINNEKIKKRKLKEENKRKVLEAERAKDEQLVRKRRREERRDKYRAQDKQNKKIRRAEV 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2764 1216 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 415 IPR039761 GO:0042254
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 9 43 - -
Ssu3g2764 1216 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 726 1048 IPR007034 -
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 465 485 - -
Ssu3g2764 1216 SMART DUF663_2 718 1047 IPR007034 -
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 1 69 - -
Ssu3g2764 1216 Pfam AARP2CN (NUC121) domain 233 318 IPR012948 GO:0005634|GO:0042254
Ssu3g2764 1216 Coils Coil 1152 1198 - -
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 525 563 - -
Ssu3g2764 1216 Gene3D - 88 247 IPR027417 -
Ssu3g2764 1216 PANTHER RIBOSOME BIOGENESIS PROTEIN 484 1207 IPR039761 GO:0042254
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 428 495 - -
Ssu3g2764 1216 PANTHER BNAC08G44910D PROTEIN 1 415 - -
Ssu3g2764 1216 PANTHER BNAC08G44910D PROTEIN 484 1207 - -
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 1177 1216 - -
Ssu3g2764 1216 CDD BMS1 49 275 IPR037875 GO:0005525
Ssu3g2764 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 221 IPR027417 -
Ssu3g2764 1216 MobiDBLite consensus disorder prediction 518 570 - -
Ssu3g2764 1216 SMART aarp2cn2 233 319 IPR012948 GO:0005634|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2764 Ssu-Chr3 81954954 81963298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2764 K14569 - gmx:100792176 2049.25