Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2757 ATGCCTCGTTACAAGGACGAGTCCCCTGCAGTTCGGGTCTACACTGTCTGCGATGAATCCAGATATTTGATTGTGAAGAACGTTCCGGCATTAGGTTGTGGGGATGATTTGCTGCAACTCTTTTCATCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGCGAGGAATACACTGATGTCTTTTGGATCAAATTCCGCCTTATCAGCAACGCCAGGTTTGCCAAAAGGAAATTGGATGATTTTGTTTTCTTCGGGAATCAACTGCAGATTTCATATGCTCCCCATTTTGAGAGCCTGGCGGACACAATGGATAAATTAGAGGGAAGAAGAAGGGAGTTTTAG 354 0.4548 MPRYKDESPAVRVYTVCDESRYLIVKNVPALGCGDDLLQLFSSYGEVEECKPMDAEDCEEYTDVFWIKFRLISNARFAKRKLDDFVFFGNQLQISYAPHFESLADTMDKLEGRRREF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2757 117 Coils Coil 107 117 - -
Ssu3g2757 117 Gene3D - 16 112 IPR012677 -
Ssu3g2757 117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Ssu3g2757 117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Ssu3g2757 117 CDD RRM_RBM48 11 110 IPR034264 -
Ssu3g2757 117 PANTHER UNCHARACTERIZED 3 116 IPR039599 -
Ssu3g2757 117 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2757 K24824 - gmx:100527829 227.254