Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2754 ATGGGCAATGGTAACACTAGTCATCTCTTCAAGCTCTTGCTTTTCCTTCTAACTCTTCACTCTTCGGTCGCTGAGATTTTCTTCGAAGAGAGATTCGAAGctgGATGGAAGAGCCGTTGGGTGTTATCCGATTGGAAAAGGAGTGAGGGAAAAGCGGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAATGATGCCAGGCATTTTGCCATATCTGCAAAGGTACCCGAGTTTAGCAATAAGAACAGAACCCTGGTGGTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAGCTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTACAGTTTGATGTTTGGACCAGATATATGTGGTTCACAGACAAAGAAGCTTCATGTTATACTATCATACCAGGGGCAGAATTACCCTGTTAGAAAGGATCTGCAATGTGAAACTGATAAGTTGACTCATTTCTATACACTTATTCTAAGGCCTGATGCGTCCTATAGTATCCTTGTTGATAATCGAGAGAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAATGCAAAAAAGCCAGCAGATTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGCCAAACCTGAGGGATATGATTCAATTCCAGTTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGACGAAGATGATGGACTATGGAAGCCCCCAAAGATTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATATTCTCAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGATCCACAGTATGCAAAGCAAACTGTGGATGAATTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGaagcagaaaaagaaagaagggctAGGGAAGAAGAGGAGGCACAGAAAGCAAGAGAAGAGGGTGAAAAAAGGAGGAGGGAGAGGGATCGTAAATATGGAGATAGGAGGCGTCGTCGAAGGCCGGATCCCCACGATATGGATGATTACCATGATGAACTCTGA 1257 0.4208 MGNGNTSHLFKLLLFLLTLHSSVAEIFFEERFEAGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDARHFAISAKVPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHVILSYQGQNYPVRKDLQCETDKLTHFYTLILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVNAKKPADWDDREYIEDPNDAKPEGYDSIPVEIPDPKAKKPVDWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYILKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQTVDEFMANNREAEKEAFEEAEKERRAREEEEAQKAREEGEKRRRERDRKYGDRRRRRRPDPHDMDDYHDEL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2754 418 MobiDBLite consensus disorder prediction 356 418 - -
Ssu3g2754 418 MobiDBLite consensus disorder prediction 248 268 - -
Ssu3g2754 418 Coils Coil 356 394 - -
Ssu3g2754 418 PIRSF Calreticulin 5 416 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Ssu3g2754 418 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 223 IPR013320 -
Ssu3g2754 418 Gene3D Calreticulin/calnexin, P domain 199 319 IPR009033 GO:0005509|GO:0005515
Ssu3g2754 418 PANTHER CALRETICULIN-3 9 418 - -
Ssu3g2754 418 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
Ssu3g2754 418 Gene3D - 25 381 - -
Ssu3g2754 418 MobiDBLite consensus disorder prediction 224 238 - -
Ssu3g2754 418 PANTHER CALRETICULIN AND CALNEXIN 9 418 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 MobiDBLite consensus disorder prediction 224 272 - -
Ssu3g2754 418 MobiDBLite consensus disorder prediction 356 394 - -
Ssu3g2754 418 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Ssu3g2754 418 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 Pfam Calreticulin family 29 262 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Ssu3g2754 418 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2754 Ssu-Chr3 81841665 81847787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2754 8 346 Miscellaneous Gene Families AT5G61790 35.678 8.53e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2754 K08057 - gmx:100802428 733.791