Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2752 ATGGCGGTGGATGATCGGTTTGCAGATTTGAACCCTAAGACGTGCGTGGTTTTAGGCGGCAGAGGATTCCTGGGAAGATCGTTGGTCCTGACGCTGTTGAAACTCGGTAACTGGATCGTCCGAGTTGCCGATTCCGCTCAGTCGCTCCAACTCCATCACTCCGAGTCTCTCCTCGAACGAGCTCTCTCTTCTGCTCGCGCTTCTTACTTCCACATCGACCTTCGCGATAAGCGCAACATTGTCAAAGTTCTTGAAGGTTCCTCTGTCGTCTTTTATATGGATGTTGCTGGCGTCGATGTGAATGACTTCTATACTTGCTATAAGCTTATAGTTCAAGGTGCAAAGAATGTCATTAGTGCGTGCCGAGAATGTAGGGTGAAACGCCTAATTTATAACTGTTCTGCGGATGTTGTATTTGATGGTTTGCATGATATTCGTGATGGAGATGAGTCGTTGGGATATCCTTGGAAAACTGACAACATGTTAGGTGACCTTAAGGCTCAAGCAGAGGCTTTGATCCTGAGTGTCAATGACATTGATGGCCTATTGACATGCTCTCTTCGTCCTAGTAATGTGTTTGGACCTGGTGACACAGAATTTGTGCCATATTTTCTGAAGTTAGCAAGATTTGGTTTTGCAAAGTTTATTATAGGGACTGGTGATAATCTTTCAGACTTCACCTTTTCTGAAAATGTTACTCATGCCCATATCTGTGCAGAAGAAGCCTTAAATTTCCAAACGGTTTCTGTGGCAGGAAAGGCATTTTTCATCACAAATCTTGAGCCTATGAAATTCTGGGAATTTCTCTCGCTTTTGCTAGAAGGTCTTGGATATCAAAGGCCGTTCATCAAACTTCCTGCTAAGTTGGTGCAATATATTCTATCAGTTTTAAAGTGGTTACATGAAAAGTTGGGACCCAGATACTTCAGTTATCCtttattagttcatttttttCAGTTAGCTTCATACACCCGAACTTTCAACTGCATGGCAGCTCAGAAAGATATTGGATACTCACCACTAGTTTCCCTTGAGGAAGGAGTCACATTAACCATAGAATCATTCTCTCGTTTAGCCAGAGACTTGTCTTTTTCAAGATGCTGCAGTTCCCCTGAACAGTCAAAAGCGGATAAGCTACTGGGTGGAGGAAAAGTGGCCAACATTTTGTTGTGGAGAGACGAGAAGAAATCCTTTACATATTTCCTTCTGCTGGTTTTTTCGTTTTACTGGTTTTTCCTTTCTGGAAGAACTTTTATATCATCTGCTGCGAGACTTTTGCTGCTTGCCACATTACTTTTTTATGGACATGGTTTTCTGCCATCAAAGTTatttggtttccatatacAAAGGATACCCATGTCTTATTTTGAGATCTCTGATACGGTAGTGAAAGATTCAGTTACAACTACAGTATATCTTTGGAACAAgggttttcaaaatataagagGACTGGCCCAAGGGGACGACTGGTGTACATTCTTCAAGATTGCAGTTTTTCTATACCTTCTGAAATTGATCCTGACAGAGTTGTTGACAAAATTGATAGGCATAGGTTTGGTGTTCTCATTTATGGCGTTTTTTGTTTACGAGCAATATGAATCAGAAATTGATGGATTGGTGGATATTCTCTTCACCAGTTTGAAGGAGTTCATGATATATTTGACGAGAATTTCACCTGTTTCTATAACGTGGCTTCAACATTATCAGGACAACTTTCAGCATTATGAAGGACCAAGAAAGGTAAAAGACCTGAGATAG 1758 0.4027 MAVDDRFADLNPKTCVVLGGRGFLGRSLVLTLLKLGNWIVRVADSAQSLQLHHSESLLERALSSARASYFHIDLRDKRNIVKVLEGSSVVFYMDVAGVDVNDFYTCYKLIVQGAKNVISACRECRVKRLIYNCSADVVFDGLHDIRDGDESLGYPWKTDNMLGDLKAQAEALILSVNDIDGLLTCSLRPSNVFGPGDTEFVPYFLKLARFGFAKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQTVSVAGKAFFITNLEPMKFWEFLSLLLEGLGYQRPFIKLPAKLVQYILSVLKWLHEKLGPRYFSYPLLVHFFQLASYTRTFNCMAAQKDIGYSPLVSLEEGVTLTIESFSRLARDLSFSRCCSSPEQSKADKLLGGGKVANILLWRDEKKSFTYFLLLVFSFYWFFLSGRTFISSAARLLLLATLLFYGHGFLPSKLFGFHIQRIPMSYFEISDTVVKDSVTTTVYLWNKGFQNIRGLAQGDDWCTFFKIAVFLYLLKLILTELLTKLIGIGLVFSFMAFFVYEQYESEIDGLVDILFTSLKEFMIYLTRISPVSITWLQHYQDNFQHYEGPRKVKDLR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2752 585 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 492 - -
Ssu3g2752 585 Pfam Reticulon 385 541 IPR003388 -
Ssu3g2752 585 ProSiteProfiles Reticulon domain profile. 385 550 IPR003388 -
Ssu3g2752 585 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 286 IPR002225 GO:0003854|GO:0006694|GO:0016616
Ssu3g2752 585 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 357 IPR036291 -
Ssu3g2752 585 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 3 11 492 - -
Ssu3g2752 585 Gene3D - 6 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2752 Ssu-Chr3 81819045 81824549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2752 13 360 Lipid Metabolism Gene Families AT2G33630 29.144 1.15e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2752 K23558 - gmx:100794808 996.882