Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2750 ATGGGGTTGGAATCGGTGGGAGATTTGGCGACTAACGTTATTCTGAACAAATTAGGAGCCGAAGACATTGCGAGAGTCGCGTGTGCGAGCAAGAGGTTTAGGTCTTCCGCTTCCGATGACACTCTTTGGAGCAATCTCTGCTTCCACGAACTCGCTTTGACCCAACCTGTCGATCATCTCGGAAACCCTCTCCCTTCCTTCAAGGAATGTTATCAAACATGGAGAGAAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAGAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCAACTGAAGCTGAGATTCAGGAGTTGGAGAATGTATTGAAGGTGAAATTGCCACTTCCTACAAGGATCCTTTATCGCTTTCATAATGGGCAAGAAATTGCAAAAGCAGATCTGGAAACTAGTACATTTGGCAGTTCATTGGGTCTAATCGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTATAAGTCAAATAATCCTAGAAACTCAGCAAAATAGGCGTCGCTTGGGCTTTTTAAGAAGATCTAAGTATGTTCTTGTGGCTGCTTCGTCCACATACAGTGAAAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGAACCAGGGATCTTCATACCAATAGAGACATAATCCCTTGTGTACCTCATGATCTGATTAGTTTACATCAGGAATTGAATAGTGGAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCATTTAGAACATGGCTTTATCAAACTTAATGACGAAGTAAATGGCAGAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAACTGCTGTTACTAATGGTGTGAAGGTTCGTGCTTCTGCGTTGGTTAGCCCTGAGTTGATTGATCTTCGAGATGACCTTGAAAAGTACTATTTTGCTTATTCAATCCGCTTGTCCCTTGAACCTGAAGGATGCATCATTAATGGAATGTCCTTCAGCTCTTGTCAGCTCCATTGGAGGCACTGGATCATCCGTGCTAATGATATTGTTGTATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTTTCCACTTTTGCGTCCGGGTGCTAAAGAATTTGTTTATCAGAGTGGCACGCCTCTACCAATACCATCAGGGTTCCATTGA 1227 0.4238 MGLESVGDLATNVILNKLGAEDIARVACASKRFRSSASDDTLWSNLCFHELALTQPVDHLGNPLPSFKECYQTWREAFVMYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCKGATEAEIQELENVLKVKLPLPTRILYRFHNGQEIAKADLETSTFGSSLGLIGGYSFYSHLVNVYLLPISQIILETQQNRRRLGFLRRSKYVLVAASSTYSEKLFFLNCTNGQLYVGTRDLHTNRDIIPCVPHDLISLHQELNSGEQQDAMLLWLEEHGRHLEHGFIKLNDEVNGRSINLFPEEPPLCSTAVTNGVKVRASALVSPELIDLRDDLEKYYFAYSIRLSLEPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAVIGQFPLLRPGAKEFVYQSGTPLPIPSGFH 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2750 408 ProSiteProfiles ApaG domain profile. 302 408 IPR007474 -
Ssu3g2750 408 Gene3D - 9 93 - -
Ssu3g2750 408 SUPERFAMILY SMI1/KNR4-like 92 224 IPR037883 -
Ssu3g2750 408 PANTHER F-BOX PROTEIN SKIP16 1 404 - -
Ssu3g2750 408 Gene3D ApaG domain 300 408 IPR036767 -
Ssu3g2750 408 Gene3D - 94 239 IPR037883 -
Ssu3g2750 408 SUPERFAMILY ApaG-like 304 407 IPR036767 -
Ssu3g2750 408 PANTHER F-BOX PROTEIN SKIP16 1 404 - -
Ssu3g2750 408 Pfam ApaG domain 325 406 IPR007474 -
Ssu3g2750 408 SUPERFAMILY F-box domain 14 80 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2750 K10290 - gmx:100809876 735.332