Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2743 ATGGCAACTTCGTTATTCCGCAGCATAAGGAGAGCTTCCTTTGCTCTCAGATTCTCGTACGCTACCTCGTTTTCGTTCTCTCCCAGGTCAGTTGGGAGGAGCCAAATGTGTATGTGTTCTCCGTTGAGACACTGTGTCCCGCCAGGAGAGCAAGGTCATTGGTGGGGTTTAAGAAATTTGAGCTATGGCAGGGTGAACCTTGTGATAACGGGAGGGAAGACCAAGTTTGAGACTCATGAGGTTGAGGCTCCGAAGAAAGACAAGTGGAAGACGAAGAAGAGGTTGAAGATGCAGAGGAAgagggagaaagagaagaggaaaGCGGCAAACAGGAAGGACCCCCGTCGACTTGGCGtcaaagggaagaaaaagaagcaGAGATTTGCAAATGCAGAAGAGAGGATCAAGTACAAGATTGAAAAAGCCAGAATTAAGGAAGCATTGCTCATTGAAAGGCTCAAACGATATGAAGTTGCTAAAGTTCAGGGTCCTGTTGTAAAGCCTGATGGCTTGACAGGGGAGGAGCAgttttatttgaagaaaatgGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCATATGCAAGCCTTGTAAGCCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCACTTCAAATAATTGGAGATGACACTGTAATATTTTATCGCGGAAAGAACTATGAACAGCCTGAGGTTATGTCACCAATTGATACCCTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTCAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAGCTATATTACAGACACGTTGCACTTTACGGTGATCCAAACAGCCGAAATCCCTTATCAATGCTGGACAGTCCAAGAGAAAACTCCAAGGAAAAAGGGAATCATGAAATTCGAGATAACAAAATCCCTGACTCGAACACTGATTATCTCTCAGAGACTGAAGCAGATTCCACGGAAATGGAGCTATCAGAAACAGAAGATAGTTTTGAAGATGAGAAATTGTTAATGAATGAATCAGATTCTGAAGAGGACAGCATGTTGGATTCCAATGGTGATCAAGAAACAGAggtatattttactaaattacgAGATGAAAGTGTAAGCTCGACCACAGGTCCTTCATCAATGTCTAAACATAGCcactattataataatcaatatttataa 1287 0.3963 MATSLFRSIRRASFALRFSYATSFSFSPRSVGRSQMCMCSPLRHCVPPGEQGHWWGLRNLSYGRVNLVITGGKTKFETHEVEAPKKDKWKTKKRLKMQRKREKEKRKAANRKDPRRLGVKGKKKKQRFANAEERIKYKIEKARIKEALLIERLKRYEVAKVQGPVVKPDGLTGEEQFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAQELARLSGGIPLQIIGDDTVIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNSRNPLSMLDSPRENSKEKGNHEIRDNKIPDSNTDYLSETEADSTEMELSETEDSFEDEKLLMNESDSEEDSMLDSNGDQETEVYFTKLRDESVSSTTGPSSMSKHSHYYNNQYL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2743 428 Gene3D - 171 269 IPR035920 -
Ssu3g2743 428 MobiDBLite consensus disorder prediction 354 368 - -
Ssu3g2743 428 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 389 IPR040286 -
Ssu3g2743 428 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 389 - -
Ssu3g2743 428 Coils Coil 92 112 - -
Ssu3g2743 428 MobiDBLite consensus disorder prediction 325 345 - -
Ssu3g2743 428 MobiDBLite consensus disorder prediction 89 106 - -
Ssu3g2743 428 MobiDBLite consensus disorder prediction 391 428 - -
Ssu3g2743 428 SUPERFAMILY YhbY-like 171 265 IPR035920 -
Ssu3g2743 428 Pfam CRS1 / YhbY (CRM) domain 171 255 IPR001890 GO:0003723
Ssu3g2743 428 MobiDBLite consensus disorder prediction 314 428 - -
Ssu3g2743 428 SMART CRS1_YhbY_2 171 255 IPR001890 GO:0003723
Ssu3g2743 428 MobiDBLite consensus disorder prediction 79 126 - -
Ssu3g2743 428 ProSiteProfiles CRM domain profile. 169 266 IPR001890 GO:0003723
Ssu3g2743 428 MobiDBLite consensus disorder prediction 376 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2743 Ssu-Chr3 81701858 81705630 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2743 - - gmx:100796393 699.508