Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2724 ATGGCACCAGGTCGTTGTTCTGCTTGGTTGAATTCAAATTGCACCGGTGGCGATTCTGCAACAGAGCCTTATTTGGTTACACATCACCAACTTCTTGCTCATGCAACTGTCGTTCGTGTGTACAAGACCAAATATCAAGTACCTCAAAAGGGTTTGATAGGCATAACCTTGGTAGCTAATTGGTTTTTGCCGCTTAGAGATACCAAATCTGATCAAAAGGCTGCTGAGAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACATCTGGAGACTATCCAAAAAGCATGCGATCTCTTGTGAGAACACGATTACCAAAGTTTACTACAGAGCAAGCCAAACTACTTGTTGgttcatttgattttattggCCTAAACTATTACTCTACAACATATGCCTCTGATGCACCTCATCTAAGCAATACTAGACCTAGCTACATCACAGATTCTCTTGTTAATCCTGCATGTAAGGACTTCAATATTCTATTATTCTTTCAATTCCCTAAATTGCATATTGCTTCTGATTGGTTATATGTTTATCCAAGAGGAATTCGTGACCTTTTATTATACACCAAGGAAAAGTACAATAATCCTTTAATTTACATCACTGAAAATGGTATAAATGAGTATGATGAACCAACACTATCACTTGAGGAATCTCTTATGGATACCTTTAGAATTGACTATCATTATCGTCATCTCTTTTACCTTCAATCTGCAATTAGGGATGGTGTGAATGTAAAGGGATATTTTGCATGGTCATTACTGGATAACTTTGAGTGGGCCACTGGCTATACTGTGCGATTTGGACTCGTCTTCGTCGATTACAAAGATGGCTTGAAAAGATACCCCAAACTCTCGGCACATTGGTACAAGAATTTCCTCAGTAAATCTTAG 903 0.3776 MAPGRCSAWLNSNCTGGDSATEPYLVTHHQLLAHATVVRVYKTKYQVPQKGLIGITLVANWFLPLRDTKSDQKAAERAIDFMYGWFMDPLTSGDYPKSMRSLVRTRLPKFTTEQAKLLVGSFDFIGLNYYSTTYASDAPHLSNTRPSYITDSLVNPACKDFNILLFFQFPKLHIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYDEPTLSLEESLMDTFRIDYHYRHLFYLQSAIRDGVNVKGYFAWSLLDNFEWATGYTVRFGLVFVDYKDGLKRYPKLSAHWYKNFLSKS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2724 300 SUPERFAMILY (Trans)glycosidases 1 298 IPR017853 -
Ssu3g2724 300 ProSitePatterns Glycosyl hydrolases family 1 active site. 202 210 IPR018120 -
Ssu3g2724 300 Pfam Glycosyl hydrolase family 1 16 299 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 Gene3D Glycosidases 1 298 - -
Ssu3g2724 300 PRINTS Glycosyl hydrolase family 1 signature 225 236 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 PRINTS Glycosyl hydrolase family 1 signature 246 263 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 PRINTS Glycosyl hydrolase family 1 signature 202 210 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 PRINTS Glycosyl hydrolase family 1 signature 270 282 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 PRINTS Glycosyl hydrolase family 1 signature 121 135 IPR001360 GO:0004553|GO:0005975
Ssu3g2724 300 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 1 299 - -
Ssu3g2724 300 PANTHER GLYCOSYL HYDROLASE 1 299 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2724 Ssu-Chr3 81337844 81367204 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2724 1 299 Glycoside Hydrolase AT2G44450 51.171 1.31e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2724 - K01188 gmx:100802250 526.554