Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2722 ATGGGTATGGCATCCAACGGCTATCTATATCTCCTCCACCTTGGTGTCTCAACTCTCGTTATAAGCTCCTCCTTTACAATCTCCCAAGCTGTTGCGCCTATTCTTGATGTTTCTTCTCTAAATAGGACCAGTTTTCCCCCAGGCTTCATCTTTGGCACTGCCTCCTCCGCCTACCAGTACGAAGGTGCTGCAAATGAAGGAGGCAGAGGACCAAGTACATGGGATACTTTTACTCATAAATATCCAGAAAAAATATTGGATAGAAGCAATGGAGATGTTGCTGTTGATCAATATCATCGCTATAAGGAAGATGTTGGAATCATGAAGTATATGAATACGGATGCTTACAAATTCTCCATCTCTTGGTCAAGGATACTGCCAAAAGGAAAAGTAAGTGCGGGTATAAACCAAGAAGGAATCGAATATTACAACAATCTCATCAACGAGCTTCTGGCAAATGATCTTCTTCCATTTGTGACCCTTTTCCATTGGGATCTTCCCCAAGCCTTACAAGATGACTACGGTGGCTTCTTAAGCCGTCATATTATAAATGATTTCCAAGACTATGCTGAGCTATGCTTCAAGGAATTTGGAGATAGAGTGAAGCATTGGATCACTTTTAATGAGCCATGGAGTTACAGTATGGGTTCAGAGCCCTACATGAGCTCACACTACCAGCTCCTTGCTCATGCAGCTgctgtcaaaatttataaaaacaattatcagGCATCTCAAAATGGTTTGATAGGCATCTCCTTAAATTGTCACTGGTTCATTCCGTTCTCAAATGACACATTAGATCATCAAGCTGCCCAACGAGCTCttgatttcatgtttggatGGTTCATGCAACCTCTGACAACAGGAAATTATCCAAAAATCATGCAGTCCTTGCTGGGAAGCCGATTACCAAACTTCACTAGAGAGCAATCCAAGCTACTTATTGGCTCGTTTGATTTTATTGGACTCAATTACTATACCACTTATTATGCTGCTCATATACCCCATCCAATTAATAACACAAGCAATACTAGCTATTTACAAGATACTCATGTCAATTTAACAACTGAACGTAACGGGACACCCATTGGACCAAGGGCTGCTTCATTTTGGCTATATGTTTATCCAAGGGGACTTCGAGAACTATTGTCGTACATAAAGATGAAGTATAGCAACCCTGTAATTTACATAACAGAAAATGgtATGGACGAGTCCAATGATCCAACGCTAACACTTGAAGAAGCACTCATGGATACTTACAGAATTGATTACTTCTATCGccatctttattatattttaattgcaatCAAGGCTGGGGTGAAAGTACAAGGATATTTTGCATGGTCACTTTTGGACAACTTCGAATGGAATGCTGGCTACACCTTGCGTTTTGGAATTAACTTAGTCGATTACAAGGATAATTTGAAAAGACACCAAAAGCTCTCTGCTCATTGGTTTAggaattttcttcaaaaatactAG 1482 0.3839 MGMASNGYLYLLHLGVSTLVISSSFTISQAVAPILDVSSLNRTSFPPGFIFGTASSAYQYEGAANEGGRGPSTWDTFTHKYPEKILDRSNGDVAVDQYHRYKEDVGIMKYMNTDAYKFSISWSRILPKGKVSAGINQEGIEYYNNLINELLANDLLPFVTLFHWDLPQALQDDYGGFLSRHIINDFQDYAELCFKEFGDRVKHWITFNEPWSYSMGSEPYMSSHYQLLAHAAAVKIYKNNYQASQNGLIGISLNCHWFIPFSNDTLDHQAAQRALDFMFGWFMQPLTTGNYPKIMQSLLGSRLPNFTREQSKLLIGSFDFIGLNYYTTYYAAHIPHPINNTSNTSYLQDTHVNLTTERNGTPIGPRAASFWLYVYPRGLRELLSYIKMKYSNPVIYITENGMDESNDPTLTLEEALMDTYRIDYFYRHLYYILIAIKAGVKVQGYFAWSLLDNFEWNAGYTLRFGINLVDYKDNLKRHQKLSAHWFRNFLQKY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2722 493 PANTHER GLYCOSYL HYDROLASE 6 492 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 PRINTS Glycosyl hydrolase family 1 signature 395 403 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 PRINTS Glycosyl hydrolase family 1 signature 317 331 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 PRINTS Glycosyl hydrolase family 1 signature 463 475 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 PRINTS Glycosyl hydrolase family 1 signature 439 456 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 PRINTS Glycosyl hydrolase family 1 signature 418 429 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 Pfam Glycosyl hydrolase family 1 43 491 IPR001360 GO:0004553|GO:0005975
Ssu3g2722 493 Gene3D Glycosidases 25 492 - -
Ssu3g2722 493 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Ssu3g2722 493 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 6 492 - -
Ssu3g2722 493 SUPERFAMILY (Trans)glycosidases 32 491 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2722 Ssu-Chr3 81310867 81317524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2722 14 492 Glycoside Hydrolase AT5G44640 49.802 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2722 - K01188 gmx:100785608 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2722 3 81310867 81317524 Ssu3g2722 3 81310867 81317524 ECH