Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2720 ATGATAAAGCCTCAAGTGTATCAATCACAAAACACCAACCAAACCCTCTTGTTTCTGCAGCGGCCATCCGTTCCCGGTATTGGGACTAGTGCATCTCTTCCACTATGGTTGGGGAAGAAAGTGCGGAGGCACAAAAAGGTTAACCACCTCGTACTCGTTTCTCGCAACGTTCAAACTAGTTCTACTTGTGCAACTCTCACAGGTACAGATAAGACAACAGAGAAGAGTACAGTGAAGGTTAAGGCCATAGTTAAGGTCAAAATAACTGTGGCCGATTTCTTTTCAAGTCTGAGGTTAGACCGAGGAATCGACGACATAACAGATTTGCTTGGTAAATCTCTCCTCTTGGAGCTTGTTAGCTCTGAGCTTGACCCCGTGACGGGAGTAGAGAAGGAAACGCTTAAAGCATACGCACACAAAGCAGGCCAAGGCGAGGAGTCGGTTAAGTATGAAACTAAATTTGAAGTTCCAGGTGATTTTGGGGAGATTGGTGCTGTTTTGGTTGAGAATGAGCATCACAAGGAGATGTTCCTTGAAACCATCCTCCTCGATGGCTTCCCGGAGGGTCCTGTTCGTTTTGACTGTGCCTCTTGGGTTCACTCTAAGTTCGATAATCCCACCAATAGGGTCTTCTTCTCCAATAAGTGTTACTTACCGCGGGAGACACCGAGTGGATTAAGAAGACTAAGAGCAGAAGAATTGAGTAATATGCGAGGCAATGGAGAAGGAGAACGCAAAAGCTTTGAAAGAATATACGATTACGATATATACAATGACATTGGAGATCCTGATAAAAGCCTTGACCTTCAGAGACCTCCTTTGGGAGGTAAAGAGCAACCTTATCCTAGACGTTGCCGAACTGGCCGGCCACATAGTGAAGCAGATCCATTATCAGAAAAAAGAAGTAGAAGATTTTACGTTCCAAGGGACGAGTGCTTCTCAGAGGTGAAGCAGCTCACTTTCTCAACCAAGACCTTACACTCAGTGTTGCTAATATTGCTTCCATCTCTGGggaaaatcatcaaagaaaagGACCTCGCATTTTCGTACTTCCACGACATAGATTCGCTCTTCAGCACTGGACTGGACTTACCTACTGAGCATGAAACCGAGAAGGGATTCCTAGGAAAAATCATGCCCAGGCTCGTCAAGTCCATTTCTGGCGACAGGGGGGGACACGTGCTTCGCTTTGAGACCCCAGAGACAATGAGCAGGGACAGGTTTTTCTGGTTTAGGGATGAGGAATTTGCTAGACAGACTGTTGCTGGTCTCAACCCATGTAGCATACGTTTGGTCACAGAATGGCCATTGAAGAGTAAACTTGACCCAGAAATATATGGTCCAGCAGAATCAGCAATCACCTCAGAAATTATCGATAGAGAGATTGGAGGCATAATATCTGTGGAAAAgGCGATCGAAGAAAAGAAGCTGTTCATGTTAGACTACCATGACTTACTTTTACCCTACGTTAACAAAGTACGCAAACTCAAGGGGAAAACACTGTATGGGTCACGAACTTTGTTCTTTCTAAACCCAGAGGGGACACTGAGGCCTCTAGCAATTGAGCTGACTCGACCACCAACAAATGGAAAAGGCCAATGGAAGCAAGTTTTCACGCCTTCTTGGCACTCAACCAGTGTTTGGCTCTGGAGGATAGCCAAGGCTCATGCTCTTGCGCATGACTCTGGCTATCACCAACTTGTTAGTCATTGGTTAAGAACTCACTGTGTGACAGAGCCCTATGTTATTGCAACCAACAGGACAACTTAG 1770 0.4514 MIKPQVYQSQNTNQTLLFLQRPSVPGIGTSASLPLWLGKKVRRHKKVNHLVLVSRNVQTSSTCATLTGTDKTTEKSTVKVKAIVKVKITVADFFSSLRLDRGIDDITDLLGKSLLLELVSSELDPVTGVEKETLKAYAHKAGQGEESVKYETKFEVPGDFGEIGAVLVENEHHKEMFLETILLDGFPEGPVRFDCASWVHSKFDNPTNRVFFSNKCYLPRETPSGLRRLRAEELSNMRGNGEGERKSFERIYDYDIYNDIGDPDKSLDLQRPPLGGKEQPYPRRCRTGRPHSEADPLSEKRSRRFYVPRDECFSEVKQLTFSTKTLHSVLLILLPSLGKIIKEKDLAFSYFHDIDSLFSTGLDLPTEHETEKGFLGKIMPRLVKSISGDRGGHVLRFETPETMSRDRFFWFRDEEFARQTVAGLNPCSIRLVTEWPLKSKLDPEIYGPAESAITSEIIDREIGGIISVEKAIEEKKLFMLDYHDLLLPYVNKVRKLKGKTLYGSRTLFFLNPEGTLRPLAIELTRPPTNGKGQWKQVFTPSWHSTSVWLWRIAKAHALAHDSGYHQLVSHWLRTHCVTEPYVIATNRTT 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2720 589 PANTHER LIPOXYGENASE 46 588 - -
Ssu3g2720 589 MobiDBLite consensus disorder prediction 263 300 - -
Ssu3g2720 589 Gene3D - 336 426 IPR027433 -
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 502 526 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 183 201 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 434 453 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 209 230 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 280 299 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 248 264 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 395 411 IPR001246 GO:0016491
Ssu3g2720 589 PRINTS Plant lipoxygenase signature 345 366 IPR001246 GO:0016491
Ssu3g2720 589 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 216 589 IPR013819 GO:0016702|GO:0046872
Ssu3g2720 589 Gene3D - 236 333 - -
Ssu3g2720 589 Pfam PLAT/LH2 domain 144 212 IPR001024 GO:0005515
Ssu3g2720 589 PANTHER LIPOXYGENASE 46 588 IPR000907 GO:0016702|GO:0046872
Ssu3g2720 589 ProSiteProfiles PLAT domain profile. 93 213 IPR001024 GO:0005515
Ssu3g2720 589 Gene3D PLAT/LH2 domain 77 235 - -
Ssu3g2720 589 Gene3D - 427 561 - -
Ssu3g2720 589 PRINTS Lipoxygenase signature 565 582 IPR013819 GO:0016702|GO:0046872
Ssu3g2720 589 PRINTS Lipoxygenase signature 547 564 IPR013819 GO:0016702|GO:0046872
Ssu3g2720 589 Pfam Lipoxygenase 225 588 IPR013819 GO:0016702|GO:0046872
Ssu3g2720 589 Gene3D - 562 589 - -
Ssu3g2720 589 MobiDBLite consensus disorder prediction 282 300 - -
Ssu3g2720 589 SUPERFAMILY Lipoxigenase 218 588 IPR036226 -
Ssu3g2720 589 SMART LH2_4 82 214 IPR001024 GO:0005515
Ssu3g2720 589 ProSitePatterns Lipoxygenases iron-binding region signature 1. 565 579 IPR020833 GO:0016702|GO:0046872
Ssu3g2720 589 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 79 217 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2720 Ssu-Chr3 81299885 81308401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2720 156 587 Acyl Lipid Metabolism Gene Families AT3G45140 52.294 2.39e-160 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2720 K00454 - gmx:100797626 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2720 3 81299885 81308401 Ssu3g2720 3 81299885 81308401 ECH