Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2712 ATGGAGAAATACTTGGTTTCGCATAAACACTCAATCAAAAAGGTTCAGCCTCTTCGAAGATGGCATTGGAAGAGGAGTTCGGTTGAACTGAATGGGAAATTCGAGCGTAACTATCGTCATGAGATGCTGGATCTGCTACTTCGTTCCTATTCTGAGGTTGGAGCGTTTCCGCATTTGTATCTAGTGGATGATGGGTCGCCGTGCCAATCTCATACGAATCGTGTGGTTAGTGAGGCAAATGGTGATCGCCATCTTCCATATATAAAGCAGGGCATCTCTGCAGTAGATTTTGACAACAAGGGAATATACTTGGTGTCTGTGACGAAAACAGGTTGCTTAACAGTTCACGACTTTGAAGCTCTTTATTGCCAGATACCTAAATTAACTTGCTTGAAAGAAGATCAAAGCAAGCATTTAATGCATCTCTCACTAAATCGACAACTTGATGCTGTCAGGTGGAATCCTCTTAATCAGAATGAGgTTGTTTGTGCATCTGTAAAAAGTAATGAACTACTCATATTCGATGTTGGATATGTCTCCTCAGAACCAGTTGAAGTGTTAAGAACAAGACATGCAACCACAGTTCATGGATCCAGCATACTCAAAGGTCTCTCTGATGTTGCTTTTACGTCGAATGACACAAGGATACTTGCTTCTGATACACATGGTGCGATTAATGTTTGGGATAGAAGAGTGAACGCTCTACCTTGCCTTGAGCTTGCATCTACTTCATGTGGTACGCTTAACAGCATCCAATTAAATGCTGATAATCAGATTATTTTTGGTGCTGGGAAACATGGGCTCTTGCATGTATGGGATATTCGTGGTGGAAGAGCATCTGCTACTTTTCAAAGTCACAAAGAGATATGCCATCCACCTGTAACATCAGTGAAGTTGGCAACATTGCTAGAGAAGATTAGATCTTTGAAGGCACAGGCAGATATTGTTCCCAAGGAGATTCACTCCATTGATATTAATCCATCATGCCCATATCAGTTAGCATTCCATCTTGACGATGGCTGGTCAGGCGTtttggatattaataattttcaagttACACATATTCATTGCCCACCCCCAGCTTGGTTAAACGATTCCTATATTCCCGCTGATCTATCATATTTAAGAAAACCTTCATGGTTATCGACGTGTTCGATATATTTGGCTGGGTCATCATCTGATCGTGGCATTCGTCTCTTGGATTTCTATCCCAGCACCAACTCACCTAGCCATGTGGATTACAAGGAGGATATGCAAGAAATGTCGAGGCGGAACAACCGAAGTAATCAGAAcagatttatttctttatctgAAGGAGTTATCTCATGTGCTGCTCACCCTTTGTATAATGCCATCGTAGCAGGAACTAAGAAAACTTCTTTGCTCGTGATTTCCCAAAGACGAGAGTCGTGCAGAAGTGAAGATTAG 1428 0.409 MEKYLVSHKHSIKKVQPLRRWHWKRSSVELNGKFERNYRHEMLDLLLRSYSEVGAFPHLYLVDDGSPCQSHTNRVVSEANGDRHLPYIKQGISAVDFDNKGIYLVSVTKTGCLTVHDFEALYCQIPKLTCLKEDQSKHLMHLSLNRQLDAVRWNPLNQNEVVCASVKSNELLIFDVGYVSSEPVEVLRTRHATTVHGSSILKGLSDVAFTSNDTRILASDTHGAINVWDRRVNALPCLELASTSCGTLNSIQLNADNQIIFGAGKHGLLHVWDIRGGRASATFQSHKEICHPPVTSVKLATLLEKIRSLKAQADIVPKEIHSIDINPSCPYQLAFHLDDGWSGVLDINNFQVTHIHCPPPAWLNDSYIPADLSYLRKPSWLSTCSIYLAGSSSDRGIRLLDFYPSTNSPSHVDYKEDMQEMSRRNNRSNQNRFISLSEGVISCAAHPLYNAIVAGTKKTSLLVISQRRESCRSED 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2712 475 Gene3D - 67 471 IPR015943 GO:0005515
Ssu3g2712 475 SUPERFAMILY WD40 repeat-like 85 405 IPR036322 GO:0005515
Ssu3g2712 475 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 474 - -
Ssu3g2712 475 SMART WD40_4 233 273 IPR001680 GO:0005515
Ssu3g2712 475 SMART WD40_4 180 229 IPR001680 GO:0005515
Ssu3g2712 475 SMART WD40_4 72 117 IPR001680 GO:0005515
Ssu3g2712 475 Coils Coil 411 431 - -
Ssu3g2712 475 PANTHER WD40 REPEAT PROTEIN 12, 37 1 474 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2712 - - gmx:100780441 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2712 3 81115760 81132700 Ssu3g2712 3 81115760 81132700 ECH