Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2688 ATGGCACGCGCTCTATCATTAACACCCATCTCTTACACTCTCGCTAAAACCCTATACCCAATTTTCCCATTCCACAACACTCTTCCCTTCTCCTCTTCAATCCTTTCTCGCCCAAAGCTCACTCGCCGGAGCCTATCCCGCTCTGTCCTGCGGTCTAGCGCCGGCGAATTCTCAGGCACAGGCGGTGTCGACGACGAAGAAGAATCGGAGGAATTGGACGAGCTCGATGTCATAGCTCTCGAGCAAGAAGCGAAGGACGCTGTCGAAGCGTATTCAAGCTCTCTTTCTCAAATTCTGAGCATTGAAGATGAGGAGAAAAATGATGGCAAGGAAACGGCTCAAACCCGCAGGAGGAGCGCACGTAGAACAAAATTTGGAAACAGGGCAATCGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATATGGTCGATCATATTGGGGAGAGCATGAATTCATGGTAGTGGACACAGGTGGGGTTCTCACCGTTTCAAAATCACAAGCTACTGTTGTGGAAGAGCTGGCTATTACTACTACCATTGGTATGGATGACATTCCACTTACTGTTAGAGAGGCAGCTGTTGCCAGGATGTCCTCAATGATCGAGAGACAAGCAACTGCAGCAGCTGTGGAAGAATCATCTGTTGTTATTTTCGTGACTGATGGTCAGGCAGGTCTAACAGCAGCTGACGAGGAGATTGCTGATTGGCTATGTAAAAACTACCCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGTGTCTGAATTTTGGTCCCTTGGATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACAGGAGAGCTTCTTGACCTTGTTTGTTCTGGGCTACAGAAAATTGAGGAATCAAATAatcttgatgaagaagaagattaTGTTCCGGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGGCAGAACAATAGTCAGCCCAATCAGTGGCACTACCCGTGATGCTATTGATACTGAATTTACTGGACCAGATGGACAGAAGTTCCAGCTTATTGATATTGCTGGAGTCAGGCAAAGAACAGCCATAGCTTCGGCTGGGAGTGCAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCATCGTTCTGATGTTGTTGCTCTTGTCATGGAGGCCCTGGCTTGTATCACAAAACAGCAGACTGCATCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGACTGGGCTCCAGTTGTTTATTCTACTGCTATAGCTTGTCACAGTGTTGACAAGATTATTGTTGCTGCTAGTGAAGTTGAAAAGGAGAGATCAAGAAGACTTGGCACTTCTGTATTGAATCGAGTAGTTCAGGAAGCAGTAGCTTTTAAGCCTCCTCCCAGGAAACGTGGTGGAAAAAGAGGGCATGTTTACTACTGCACTCAGGCTGCTATAAGGCCACCTACATTTGTGTTCTTTGTCAATGATGCAAAACTTTTTCCTAAGACTTACCGGCACTATATGGAGAAGCAACTGCGTTCAGATGCAGGTTTTTCTGGTACACCCATCCGACTTCTGTGGCGCAGCAGAAGGAAAATGGGAAAAGATGAAGCCAAAACTGTAACAAAGACCCAAGAGAATCTTACATCAAATGATCGAAATTGGTATCAACTACACCATAGGGTCAGACATTTTGTCATGGAAGAACTGGCTGTTATTCTGCTTGTGTTGGAAAAATGGGGAAGCTTTTTATCTGGgattttacttaattactcaaaTGCATGTGCTTCCTGA 1848 0.4448 MARALSLTPISYTLAKTLYPIFPFHNTLPFSSSILSRPKLTRRSLSRSVLRSSAGEFSGTGGVDDEEESEELDELDVIALEQEAKDAVEAYSSSLSQILSIEDEEKNDGKETAQTRRRSARRTKFGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVLTVSKSQATVVEELAITTTIGMDDIPLTVREAAVARMSSMIERQATAAAVEESSVVIFVTDGQAGLTAADEEIADWLCKNYPDKYVILAVNKCESPRKRIMQVSEFWSLGFEPLPISAISGTGTGELLDLVCSGLQKIEESNNLDEEEDYVPAISIVGRPNVGKSSILNALVGEGRTIVSPISGTTRDAIDTEFTGPDGQKFQLIDIAGVRQRTAIASAGSATEALSVNRAFRAIHRSDVVALVMEALACITKQQTASYYEQDVREKLRSLDWAPVVYSTAIACHSVDKIIVAASEVEKERSRRLGTSVLNRVVQEAVAFKPPPRKRGGKRGHVYYCTQAAIRPPTFVFFVNDAKLFPKTYRHYMEKQLRSDAGFSGTPIRLLWRSRRKMGKDEAKTVTKTQENLTSNDRNWYQLHHRVRHFVMEELAVILLVLEKWGSFLSGILLNYSNACAS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2688 615 TIGRFAM small_GTP: small GTP-binding protein domain 313 414 IPR005225 GO:0005525
Ssu3g2688 615 PRINTS GTP1/OBG GTP-binding protein family signature 365 380 IPR006073 GO:0005525
Ssu3g2688 615 PRINTS GTP1/OBG GTP-binding protein family signature 315 335 IPR006073 GO:0005525
Ssu3g2688 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 296 IPR027417 -
Ssu3g2688 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 552 IPR027417 -
Ssu3g2688 615 Pfam 50S ribosome-binding GTPase 125 253 IPR006073 GO:0005525
Ssu3g2688 615 Pfam 50S ribosome-binding GTPase 315 427 IPR006073 GO:0005525
Ssu3g2688 615 PANTHER GTP-BINDING PROTEIN 126 416 - -
Ssu3g2688 615 MobiDBLite consensus disorder prediction 102 118 - -
Ssu3g2688 615 MobiDBLite consensus disorder prediction 102 121 - -
Ssu3g2688 615 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 465 546 IPR032859 -
Ssu3g2688 615 Gene3D - 309 464 IPR027417 -
Ssu3g2688 615 Gene3D - 465 549 IPR015946 -
Ssu3g2688 615 PANTHER GTP-BINDING PROTEIN 414 555 - -
Ssu3g2688 615 CDD EngA1 127 296 - -
Ssu3g2688 615 Gene3D - 92 301 IPR027417 -
Ssu3g2688 615 PANTHER GTPASE DER 414 555 - -
Ssu3g2688 615 PANTHER GTPASE DER 126 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2688 Ssu-Chr3 80619389 80630721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2688 - - gmx:100777588 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2688 3 80619389 80630721 Ssu3g2688 3 80619389 80630721 ECH