Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2687 ATGTTGAGGGTAGCGGTGCGATGGAATTGGAGGCCAATGGCTTCTCTGCCTCTAACCGCCTTCACACGCCAACCGCTCCACACGCTTAACCCTAGGCCTCGATTCCGCAGCTTCAAGCTTTTTTGTCGACCTTGTTGCTCTGCCGTTGCACAAACCTCGCATCCTCTCTCCGGCGACGTGGACCGCTACCTCCGCTGTTCCTTGCCGGAGAAGTCGCCGCTCCGAGTTGCGGTTCTCGTTAGCGGAGGCGTCGACAGCAGCGTCGCTCTCCGGCTACTCCACGCCGCCGGCCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAAAACTTTTGGTCTGAATGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTAATCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCCGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCGATCGGTGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATCTGAGGAATGAGCCTTCTGTTCTGGAACTATCACAAGACATGgtaaaGGATCAAACATATTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCGTCTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAGGCTTGCTACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTTAGTGAATTTGTTGCAAGACATATTGGGGAGAAAGAAGGTATCATACTGGAAGCTGAGACAGGAGATTTCCTTGGCGAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGCCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAGAGAAGGCGTGTATTCCGTGTTGGCTCTTTGAAATGGCTTAATGGGTTGCCCCCAGGCCAGACAAGTCAGCTCCGATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGTGATGGCCAAGATCACTCTGCTGTCGTCTGCATATCTGAAGATGATCAGGGCCTAGCAGCTGGGCAGTTTGCGGCCTTCTATGAGGAAGAACATGCATAG 1290 0.4744 MLRVAVRWNWRPMASLPLTAFTRQPLHTLNPRPRFRSFKLFCRPCCSAVAQTSHPLSGDVDRYLRCSLPEKSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADLRNEPSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEKEGIILEAETGDFLGEHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSLKWLNGLPPGQTSQLRCKVRHGPGFYDCSLQMEVEGDGQDHSAVVCISEDDQGLAAGQFAAFYEEEHA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2687 429 Gene3D Translation factors 354 429 - -
Ssu3g2687 429 CDD tRNA_Me_trans 75 428 IPR004506 GO:0008033|GO:0016740
Ssu3g2687 429 PANTHER - 61 427 - -
Ssu3g2687 429 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Ssu3g2687 429 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Ssu3g2687 429 Gene3D HUPs 61 287 IPR014729 -
Ssu3g2687 429 Pfam tRNA methyl transferase HUP domain 75 278 - -
Ssu3g2687 429 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 75 427 IPR004506 GO:0008033|GO:0016740
Ssu3g2687 429 Pfam Aminomethyltransferase beta-barrel domain 355 427 IPR046885 -
Ssu3g2687 429 Gene3D - 288 347 IPR023382 GO:0016783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2687 Ssu-Chr3 80612236 80615665 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2687 K21027 - gmx:100785275 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2687 3 80612236 80615665 Ssu3g2687 3 80612236 80615665 ECH