Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2686 ATGATGGTGCAATATAACTTTAAGAAGATTACTGTGGTGCCAAATGGGAAGGATTTCGTGGACATCATTCTCTCTCGCACCCAGCGTCAGACACCAACTGTTGTGCATAAAGGATATGCAATTTCACGGCTCCGCCAATTCTACATGCGCAAAGTGAAGTATACCCAGCAAAATTTTCATGATAAGCTCTCCACCATAATTGATGAGTTCCCTCGGCTTGACAATATTCACCCCTTCTATGGCGATCTCCTTCATGTGCTCTACAACAAAGACCATTACAAGCTTGCTCTTGGACAAATCAACACTGCCAGGAATCTTATCGGGAAGATTGCGAAAGACTATGTGAAATTACTGAAGTATGGTGACTCGCTGTATCGATGCAAGTGTCTGAAGGTGGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGATTGGCCCGAGTTTGGCTTATCTAGAACAGGTTAGACAGCACATGGCTAGGCTTCCGTCCATTGATCCGAATACAAGGACTATCTTGATCTGTGGATATCCTAATGTTGGCAAGAGCTCATTCATTAACAAAATTACAAGAGCTGATGTGGATGTGCAGCCCTACGCCTTCACTACAAAGTCTCTCTTTGTAGGTCATACAGATTATAAATACCTGAGGTACCAAGTAATTGATACACCAGGGATTTTGGACAGGCCTTTTGAAGATCGAAATATTATTGAGATGTGCAGTATCACCGCTCTAGCACATTTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGGTCTTGTGGTTACAGTATTGCTCAGCAGGCTGCTCTATTTCAGAGCATTAAGTCTTTGTTTATGAACAAGCCATTAACTATAGTCTGCAACAAGACCGACTTGCAACCGCTGGAGGGGATTTCTGAGGAAGACATGAAGTTGGTCCAGGAGATGAAAGCTGAAGCCTTGAAGACTCTAGTTGGTCAAGGGGGTGAGCCTACAAACGATGACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCAGTAAAAAATGCAGCATGTGAGAGGTTATTGAATCAGAGGGTGGAGATAAAAATGAAGTCAAAGAAGATTAATGACTGCTTGAATAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCACCATGTATTCCTCAAGCTGTTTTAGAAGCTAAAGCTAAGCAAGCAGCtgagaaggaaaagagaaaaactgAAAAGGATCTGGAGAATGAGAATGGTGGGGCAGGTGTATACTCAATGAACTTGAGAAAGAATTACATTTTAGCCAACGATGAATGGAAAGAGGATATACTGCCAGAAATTTTTGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGTTAAGACAGGCAGAAGCTGAGGATGATGATTTTGAGATTGATGGAACTGAATTGACGCCTGAACAGCAAGAAGCTTTAGCTGAgattaggaaaaagaaaagcttGCTCATCCAGCAGCATAGGATTAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGACAAGGACAACCAGTTCACATCAGAAAGAATGGGAAGGCAGCTGTCATCTTTGGGGCTTGATCCCACTTTGGCAATTGAGAGAATGCGCAGCAGATCTGCCTCTAGGAGAGGTCGTAAAAGGGAAAGATCACCTGAAACAAGAAGTGCTGATGGCAGAGATGGAATGGATATTGATGGTGACACACCTAGCAAAAAACAGCGTCTGAGCAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCAAATGAAGTTGTGCCAGGAGAGGGCTTCAAGGATTCTGCTCAAAAGGTCAAGGCAATTAAACTTGCAAAGAAGTCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGCTCCATTGGAAAGACTGAGAGACGCTAG 2040 0.4299 MMVQYNFKKITVVPNGKDFVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHDKLSTIIDEFPRLDNIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYSIAQQAALFQSIKSLFMNKPLTIVCNKTDLQPLEGISEEDMKLVQEMKAEALKTLVGQGGEPTNDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPPCIPQAVLEAKAKQAAEKEKRKTEKDLENENGGAGVYSMNLRKNYILANDEWKEDILPEIFDGHNVYDFIDPDILHRVEELEREEGLRQAEAEDDDFEIDGTELTPEQQEALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDNQFTSERMGRQLSSLGLDPTLAIERMRSRSASRRGRKRERSPETRSADGRDGMDIDGDTPSKKQRLSRSLSRSRSVSRPPNEVVPGEGFKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSIGKTERR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2686 679 Pfam NOGCT (NUC087) domain 411 464 IPR012973 -
Ssu3g2686 679 Coils Coil 403 423 - -
Ssu3g2686 679 MobiDBLite consensus disorder prediction 572 601 - -
Ssu3g2686 679 Gene3D - 163 374 IPR027417 -
Ssu3g2686 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 313 IPR027417 -
Ssu3g2686 679 MobiDBLite consensus disorder prediction 516 679 - -
Ssu3g2686 679 MobiDBLite consensus disorder prediction 519 541 - -
Ssu3g2686 679 CDD NOG 170 356 - -
Ssu3g2686 679 Pfam NOG1 N-terminal helical domain 7 166 IPR041623 -
Ssu3g2686 679 Gene3D - 4 162 - -
Ssu3g2686 679 Pfam Nucleolar GTP-binding protein 1 (NOG1) 237 293 IPR010674 GO:0005525
Ssu3g2686 679 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 2 679 - -
Ssu3g2686 679 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 2 679 - -
Ssu3g2686 679 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 170 356 IPR031167 GO:0005525
Ssu3g2686 679 PIRSF NOG1 1 679 IPR024926 -
Ssu3g2686 679 PRINTS GTP1/OBG GTP-binding protein family signature 220 235 IPR006073 GO:0005525
Ssu3g2686 679 PRINTS GTP1/OBG GTP-binding protein family signature 172 192 IPR006073 GO:0005525
Ssu3g2686 679 PRINTS GTP1/OBG GTP-binding protein family signature 193 211 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2686 Ssu-Chr3 80607296 80609335 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2686 K06943 - gmx:100795311 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2686 3 80607296 80609335 Ssu3g2686 3 80607296 80609335 ECH