Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2680 atGCTCTCACTTTCCAGAACATTCAGAAAGGTGGTGCTTCCCGGCTTCAACAACGAAGACGTGCTGGTTGAGCTCCAAGACGAGAGGGTGCTGCAAGTGAGCGTGGAGAGCGGCAACTTCGTGAGCAGGTTTAAGATCCCCGACAGCGGTAACCTCGAACAGCTCAAAGCCAACATGCATCACGGGGTTCTCGTTGTCACCGTTCCCAAGTTTCACCAATCCCCTGCTGATAGGAATGTCAGGGTCGTTGAGATTGATGGCACCGACTGA 270 0.5333 MLSLSRTFRKVVLPGFNNEDVLVELQDERVLQVSVESGNFVSRFKIPDSGNLEQLKANMHHGVLVVTVPKFHQSPADRNVRVVEIDGTD 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2680 89 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 1 86 IPR002068 -
Ssu3g2680 89 Pfam Hsp20/alpha crystallin family 35 85 IPR002068 -
Ssu3g2680 89 PANTHER 17.5 KDA CLASS I HEAT SHOCK PROTEIN 9 88 - -
Ssu3g2680 89 Gene3D - 8 89 IPR008978 -
Ssu3g2680 89 SUPERFAMILY HSP20-like chaperones 12 75 IPR008978 -
Ssu3g2680 89 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2680 Ssu-Chr3 80542786 80543349 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2680 K13993 - gmx:100797426 139.813