Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2674 ATGGCGGGTCGTTCCTTTTCAAATAAATGGAAAATCCGTGATTTGGCTTCGATATTACTGGGAGAGTTAATGAGAAGTAGCAAACCCATCAAAGACGCTTCAACGTCATTGCCCTCTGTTGCAGTGTCCGAATGTAATTCGTTCAAAACGGCGTCGTGTTTCCGGCAATACCACGACGGAAGGCCCAGAGGGCCCCTTTGGAGGGGAAAGAAGCTCATTACCAAAGAAGCGCTCTTTGTCATATTGGGGTTGAAGAGGTTTAAGGATGACGAGGATAAGCTTCACAAGTTCATCAAGACTCACGTTCTCAGACTTTTGAAGATGGACATGATCGCTGTTCTCACTGAACTTGAGCGCCAAGAACAAGTTTCTCTCGCTCTCATGATGTTTAAGGTGATGCAAAAGCAAGATTGGTACAAGCCTGATGTGTACCTGTATAAGGACTTAATCATTGCATTGGCAAGgtctaaaaaaatgaatgaagtattgcaattgtgggAAAGCATGAGAAAGGAAAATCTGTTCCCTGATTCTCAGACTTACACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCGGATGCGATGAACATATACGAGGACATGAAGAATTCTCCAGATCCGCCTGAGGAGTTGCCGTTCAGAATTTTGTTGAAAGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAGGATTTCGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCACCACAAGAGATATTTGGCGCACGCTGA 774 0.4238 MAGRSFSNKWKIRDLASILLGELMRSSKPIKDASTSLPSVAVSECNSFKTASCFRQYHDGRPRGPLWRGKKLITKEALFVILGLKRFKDDEDKLHKFIKTHVLRLLKMDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDVYLYKDLIIALARSKKMNEVLQLWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2674 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Ssu3g2674 257 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 4 256 - -
Ssu3g2674 257 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Ssu3g2674 257 TIGRFAM PPR: pentatricopeptide repeat domain 180 206 IPR002885 -
Ssu3g2674 257 Pfam PPR repeat family 141 188 IPR002885 -
Ssu3g2674 257 Gene3D Tetratricopeptide repeat domain 71 257 IPR011990 GO:0005515
Ssu3g2674 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Ssu3g2674 257 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 4 256 IPR044795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2674 Ssu-Chr3 80483385 80484330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2674 119 223 Glycosyltransferase AT1G05670 28.571 3.69e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2674 - - gmx:100798492 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2674 3 80483385 80484330 Ssu3g2674 3 80483385 80484330 ECH