Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2670 ATGGCGAATAGAGTGGACCACGAGTATGACTATCTGTTCAAGATCGTTTTGATTGGAGACTCAGGTGTAGGCAAATCCAACATCCTCTCCAGGTTCACTCGAAACGAGTTCTGCTTGGAGTCCAAATCCACTATCGGAGTTGAGTTCGCCACCAGAACTCTTCAGGTAGAGGGAAAGACTGTGAAAGCACAGATCTGGGACACAGCAGGTCAGGAGCGGTACCGTGCCATTACCAGTGCTTATTACAGAGGAGCTGTTGGTGCTCTCCTTGTATATGACATAACTAAGAGGCAAACCTTTGATAATGTCCAAAGGTGGTTGCGTGAACTGAGGGACCATGCGGATTCTAATATAGTTATCATGATGGCTGGAAATAAATCTGATTTGAGCCATCTTAGAGCGGTTTCGGAGGATGATGGTCAAGCATTGGCAGAGAGGGAAGGTCTCTCGTTTCTTGAGACATCTGCACTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATTTTGACAGAGATTTATCATATTGTTAGCAAAAAAGCTACTTGCAGCTCAGGAAGCAGCTGTTGGTACCGCACTTCCTGGTCAAGGTACCACCATCAATGTTGCGGATGCATCTGGGAATACAAAGAGAGGCTGCTGCTCCACTTAATGTGA 657 0.4627 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKATCSSGSSCWYRTSWSRYHHQCCGCIWEYKERLLLHLM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2670 218 SMART ran_sub_2 18 213 - -
Ssu3g2670 218 TIGRFAM small_GTP: small GTP-binding protein domain 11 170 IPR005225 GO:0005525
Ssu3g2670 218 PRINTS Transforming protein P21 ras signature 151 173 - -
Ssu3g2670 218 PRINTS Transforming protein P21 ras signature 54 76 - -
Ssu3g2670 218 PRINTS Transforming protein P21 ras signature 116 129 - -
Ssu3g2670 218 PRINTS Transforming protein P21 ras signature 13 34 - -
Ssu3g2670 218 PRINTS Transforming protein P21 ras signature 36 52 - -
Ssu3g2670 218 PANTHER RAS-RELATED PROTEIN RABA2D 1 184 - -
Ssu3g2670 218 SMART rab_sub_5 13 176 - -
Ssu3g2670 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Ssu3g2670 218 ProSiteProfiles small GTPase Rab1 family profile. 8 205 - -
Ssu3g2670 218 SMART ras_sub_4 10 176 - -
Ssu3g2670 218 CDD Rab11_like 10 174 - -
Ssu3g2670 218 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Ssu3g2670 218 SMART arf_sub_2 1 178 - -
Ssu3g2670 218 Gene3D - 5 205 IPR027417 -
Ssu3g2670 218 PANTHER - 1 184 - -
Ssu3g2670 218 ProSiteProfiles small GTPase Ras family profile. 1 218 IPR001806 GO:0003924|GO:0005525
Ssu3g2670 218 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Ssu3g2670 218 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2670 Ssu-Chr3 80472202 80473531 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2670 K07904 - gmx:100799021 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2670 3 80472202 80473531 Ssu3g2670 3 80472202 80473531 ECH