Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2667 ATGGCTGGGGCAAACATAGGTAGCAAAAGCAGCAGGTGGTCTTTACAGGGGATGACAGCTCTGGTCACCGGTGGATCCAAAGGAATCGGATATGCTATCGTGGAGGAGTTGGCACAGCTTGGGGCCATTGTACACACTTGCTCTTGGAATGAAGCTCAACTCAATGAATCCTTACATCAGTGGATCGCAAAAGGATACAGAGTAACTGGTTCGGTCTGTGACGTGGCGTCTCGTGCAGACAGAGAAGCGCTCATAACTAGAGTCTCCTCTGAGTTTAATGGCAAACTCAATATCCTTGTAAACAATGTGGGAACAAACATACAGAAACAGACCCTGGATTTTACGGAGGAAGATTTCTCATTTCTGATTAATACGAATCTTGAATCTGCTTACCACATAAGCCAGCTTGCACATCCTCTCCTAAAAGCTTCAGAGGCTGCAAGCATCATTTTTATATCCTCCATTGCTGGTGTGGTATCAATAGGTGTAGCATCCATTTATGGTGCAACAAAAGGAGCAATGAACCAATTGACAAAAAACTTGGCATGTGAGTGGGCGAAAGACAATATAAGGACTAATTGCGTTGCTCCAGGGCCAATCAAAACCCCTCTCGGCGACAAGCATTTTAAACATGCAAAACTCCTTAATGGTTTCATTTCGCGAACCCCTCTTGGACGGATTGGAGAGGCAGAGGAGGTGTCTTCCTTGGTGGCTTTCCTCTGCTTACCTGCAGCCTCTTACATAACAGGACAGACCATTTGTGTTGATGGCGGGTTAACGGTGAATGGTCTCTATATAAACAATGCTTAG 810 0.4543 MAGANIGSKSSRWSLQGMTALVTGGSKGIGYAIVEELAQLGAIVHTCSWNEAQLNESLHQWIAKGYRVTGSVCDVASRADREALITRVSSEFNGKLNILVNNVGTNIQKQTLDFTEEDFSFLINTNLESAYHISQLAHPLLKASEAASIIFISSIAGVVSIGVASIYGATKGAMNQLTKNLACEWAKDNIRTNCVAPGPIKTPLGDKHFKHAKLLNGFISRTPLGRIGEAEEVSSLVAFLCLPAASYITGQTICVDGGLTVNGLYINNA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2667 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Ssu3g2667 269 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 265 - -
Ssu3g2667 269 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Ssu3g2667 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Ssu3g2667 269 PANTHER TROPINONE REDUCTASE 4 265 IPR045000 GO:0016491
Ssu3g2667 269 Gene3D - 3 265 - -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Ssu3g2667 269 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Ssu3g2667 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Ssu3g2667 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Ssu3g2667 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2667 Ssu-Chr3 80378516 80449388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2667 2 264 Miscellaneous Gene Families AT2G29150 66.160 9.08e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2667 K08081 - gmx:100780806 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2667 3 80378516 80449388 Ssu3g2667 3 80378516 80449388 ECH