Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2666 ATGCATCAGGTTTCCCTCATAAATCCAGCTGCTATTCTTCCCTTGCTCTCAAGCCGCACAACCACCACCTCTTTCATTTTCAaccatagaagaaaaatatcacAGTCCAATTGCATTAGGAGCCAGTCCACACAACAACAGCATAGGTGGACTCTTCAGGGCATGACAGCTCTCGTCACTGGTGGAACTCGCGGAATAGGGCACGCCATTGTGGAGGAATTGACGGGGTTTGGAGCCAGAGTGCATACCTGTGCCAGGAATGACCATGATCTCACTAAGTGCCTTAAGAAATGGAATGATTCGAGTTTTGGGGTCACTGGCTCAGTTTGTGATGTCTCAGTTCCACAGCAGAGGGAGGCGCTCATGGAGTCTGTTTCCTCTCTCTTCCATGGGAAACTCAACATCCTTATAAACAATGTAGGGACAAACATTCGGAAACCAGTGACAGACTTCACTAGTGCAGAGTTTTCCTCTCTTATTGATACCAATTTGGGATCCGTCTTTCATGTATGCCAACTTGCATATCCACTTTTGAAAGCATCGGGAATGGGAAGTGTTGTGTTTATCTCGTCTGTTTCTGGTTTTGTCTCACTGAAGTCAATGTCTGTTCAAGGAGCAACGAAAGGGGCAATTAATCAACTTACAAGAAATCTAGCTTGTGAGTGGGCAAAAGACAATATAAGGAGTAATGCAGTGGCACCTTGGTACATCAGAACTTCAATGGTGCAGCAGGTGCTCAGCAGCAAAGACTATCTGGAAGAAGTGTACTCTAGAACTCCTCTTAGACGCTTGGGAGATCCAGCAGAAGTCTCTTCTCTTGTTGCCTTTCTTTGCTTACCAGCATCATCATACATCACTGGCCAGATTATTTGTATTGATGGAGGAATGTCCGTGAATGGTTTCTACCCAACAACAGAGTTCTAA 924 0.4448 MHQVSLINPAAILPLLSSRTTTTSFIFNHRRKISQSNCIRSQSTQQQHRWTLQGMTALVTGGTRGIGHAIVEELTGFGARVHTCARNDHDLTKCLKKWNDSSFGVTGSVCDVSVPQQREALMESVSSLFHGKLNILINNVGTNIRKPVTDFTSAEFSSLIDTNLGSVFHVCQLAYPLLKASGMGSVVFISSVSGFVSLKSMSVQGATKGAINQLTRNLACEWAKDNIRSNAVAPWYIRTSMVQQVLSSKDYLEEVYSRTPLRRLGDPAEVSSLVAFLCLPASSYITGQIICIDGGMSVNGFYPTTEF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2666 307 Pfam Enoyl-(Acyl carrier protein) reductase 63 297 - -
Ssu3g2666 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Ssu3g2666 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Ssu3g2666 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 192 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 260 280 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 178 194 IPR002347 -
Ssu3g2666 307 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Ssu3g2666 307 PANTHER TROPINONE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC 30 305 - -
Ssu3g2666 307 PANTHER TROPINONE REDUCTASE 30 305 IPR045000 GO:0016491
Ssu3g2666 307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 299 IPR036291 -
Ssu3g2666 307 Gene3D - 35 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2666 Ssu-Chr3 80362023 80364455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2666 49 301 Miscellaneous Gene Families AT2G29290 62.055 1.98e-119 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2666 K08081 - gmx:100799534 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2666 3 80362023 80364455 Ssu3g2666 3 80362023 80364455 ECH