Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2656 ATGCATGGTCTCTTGAGAAGCACAACATTGCTCGGGATTCCCACGAGATATGGCATCATCAACCGTCGCTCATTCCGATCAGAACCCGAAAGCTATGCCGAACTCATTGATATATACGCTCGCGATCGAGCGTTGCACCTTGGCAAGAAGCTTCACGCGCACCTAATCACCAACGGCCACGCTCGTTTCAACGTCATTGCTTCCAACCTCGTATCCTTGTACGCATGCTGTGGCCAACTCTCCCACGCGCGAAAACTGTTCGACAAAATACCCACAACAAATGTTCGCCGCTGGATCGCCCTAATTGGCACGTGCGCTCGCTGCGGCCTCTACGATCACGCTATCGCCGTGTTTTCTGAGATGCAAACCATTCAAGGGCTCACGCCCAACTATGTATTCGTCATCCCAAGTGTTCTCAAAGCCTGTGGCCACGTCGGGGATCGAATCACCGGAGAGAAAATCCACGGCTTCATTTTGAAGTGTTCGTTCGAATTTGATTCATTTGTGTCCAGTTCTTTGATTGTTATGTACTCTAAGTGTGCGAAAGTTCAGGATGCGCGCAAGGTGTTTGATGGGATGGCTGTGAAAGACACGGTGACTCTAAATGCTGTTGTTGCTGGGTATGTTCAACAGGGTGCGGCAAATGAGGCACTGGGTTTGGTGGAAAGTATGAAGTTGATTGGTTTGAAGCCAAATGTGGTAACTTGGAACTCTTTGATATCCGGGTTTTCGCAGAAAGGTGACCAAGGAACGGTGTCTGAGATTTTTAGGTTGATGATTGCAGATGGGGTGGAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGCAATAAGGAAGCATTTGATACGTTTAAGCAAATGTTGAGTCATGGGTTCTGCCCAACTTCGGCTACTATCAGCACCCTTTTGCCTGCTTGTGCTACCGCAGCAAGAGTTAGGGAGGTAACAGTTCCACAAGATACACCATTGGACCTAAACAATATCTTGTCAATATGCCTGCATCCTTTTTTGGATATTCAGTAG 1044 0.478 MHGLLRSTTLLGIPTRYGIINRRSFRSEPESYAELIDIYARDRALHLGKKLHAHLITNGHARFNVIASNLVSLYACCGQLSHARKLFDKIPTTNVRRWIALIGTCARCGLYDHAIAVFSEMQTIQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFEFDSFVSSSLIVMYSKCAKVQDARKVFDGMAVKDTVTLNAVVAGYVQQGAANEALGLVESMKLIGLKPNVVTWNSLISGFSQKGDQGTVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFCPTSATISTLLPACATAARVREVTVPQDTPLDLNNILSICLHPFLDIQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2656 347 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Ssu3g2656 347 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Ssu3g2656 347 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Ssu3g2656 347 PANTHER - 266 319 - -
Ssu3g2656 347 PANTHER - 32 266 - -
Ssu3g2656 347 Pfam PPR repeat 68 90 IPR002885 -
Ssu3g2656 347 Pfam PPR repeat 171 194 IPR002885 -
Ssu3g2656 347 Pfam PPR repeat 98 122 IPR002885 -
Ssu3g2656 347 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Ssu3g2656 347 Gene3D Tetratricopeptide repeat domain 197 324 IPR011990 GO:0005515
Ssu3g2656 347 Gene3D Tetratricopeptide repeat domain 17 149 IPR011990 GO:0005515
Ssu3g2656 347 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Ssu3g2656 347 Pfam PPR repeat family 196 244 IPR002885 -
Ssu3g2656 347 Pfam PPR repeat family 266 314 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2656 Ssu-Chr3 80243096 80244931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2656 25 321 Glycoside Hydrolase AT3G49170 28.571 6.35e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2656 - - gmx:100790576 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2656 3 80243096 80244931 Ssu3g2656 3 80243096 80244931 ECH