Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2654 ATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCAAACAAGAGGCTGACGATCGTGAGCGAGAGCTTAATATCTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCAGTTGGAGGGTTGtttggtggtagtggtggtgctggtgctggtgctggtgctgcCTTTTCGGAGTTTCAAGGGACTAAAGATGTGAATGTGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAAGAGGATTGGAGGTATCAACAAAGACTTAAAGGTGGAGCTTCAGTTCTGGGGGGAATTGGAGATAGGAGGAAAGTGAACAGGCCTGATGATAATGGTGGTAGATCGCTGTTTTCTACCCCACCGGGTTTTAACACGAGGAAACAAGAGAGTGAGGTGGACAATGAAAAAACAAGTGGTTCAACCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAAATTTTCCAGGATGATTTGGGGTGTAATACTTCTGTCACAGGCCTTCCTTCTCGTCCAGCCAGTCGTAATGcatttgatgaaaatgatatcaTTAGCTCTGCTGATGCAGAGTTGGCTCATGTACGCCGTGAGCCCACGGCCACTGATGCATTAAGATCAGGATCAAATGTTCAAGGATCATCTGCAGCCCAAAATATTGGCCAGCCAGCTTCATATTCTTATGCTGCTGCACTAGGATCTTCCCTGTCACGAAGCACCACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCATGCCTATTGGTGGTGGTAGAGCTGTTGCTTCTGAAAAAAGAGGTATTGCCAGTCCAGATGCATTTAATGGTGTTTCATCTGGCATCAATGACTCAGCAGATCTTGTGGCTGCATTGTCAGGGATGAACTTGTCAGCTGATGATGTGTTAGATGGTGAGAACCATTTGCCATCACAGGTTGAATCAGATATTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATGGTAAGCAACATGCTTATTTAAAGAAGTCTGAATCAGCGCACTTGCAAAATTTAGGTAAGAGCAGGAGTGGGTCAGATCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTCAAAGGATTGCCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCACCTCAGTACCAGCCTTTAGATACAAATTCATCATTTACTAACTATGGTCTGAGTGGGTACGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGTACTGGTAATCTGCCGCCCTTGTTTGAAAACGTTGCTGCAGCATCAGCAATGGCAGCTCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATATGCATAATCTTGGTAGGATGGGAAATCAAATTCCTGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACTTGAGGACATCCGAGTATACTGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTGGACAGGAACTACTTAGGTAATTCATATATGAATCTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATACTCTCGCCTCAGAAATCCCAATACAATGTACCACTGGGTGGTAAATCAGGCAGCTCTACTCATCATGGTTATTATGGAAATCCTGCATATGGTGTCGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCTCCAGTTGGATCTGGCAGTCCTGTTAGGCACAATGATTTGAATATGCGTTTTACTTCTGGAATGAGGAATTTCGCTGGGGTCATGGGACCTTGGCATGTAGATACCGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAGGAgtttaaaagcaataaaacaaAGTGTTTTGAGCTGTCGGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTacagaagaaaaaaacatgGTTTATCAGGAAATCATGCCACATGCCCTTGCGTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCCTGGCCATGTTCTGAATCTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCTTGATCAGAAGATAGAGATGGTTCAAGAGCTCGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTTATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTattgtttcaacattttttgaTCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTATTGGAGCACTGCAAAGACCCTACAACGCAGCAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAATATGGCAACTACGTTGTTCAgCATGTACTGGAACATGGGAAGCCTCATGAGCGGTCTTCTATAATAAAGGAATTAGCTGGCAAGATAGTTCAAATGAGTCAACAGAAGTTCGCCTCCAATGTTGTGGAGAAATGTTTAACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAACTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGACCAACAACGCGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTTGCACGTGTGGAAAAACTTGTTGCTGCTGGAGGTACTTACTCCGTCCATGTCATTCCTCATTTGCATTCCCACACATTCTTATATTTCGGCATCCGTGTGCGTGCGTTAGGAGCTCTTTCATCTGAAAGGGCCATGCAGAGGAAGAGTGCTATAGAGATGGATGCTATGCGTAAGAAACATGAGGCAGACCTTGAGGCATTACGTAAGAAACAAGCGGAAATGCAAACGCATCAGTAG 3288 0.4294 MLGSNEGSFGDELEKEIGMLLREQRKQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGSGGAGAGAGAAFSEFQGTKDVNVIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRYQQRLKGGASVLGGIGDRRKVNRPDDNGGRSLFSTPPGFNTRKQESEVDNEKTSGSTEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGCNTSVTGLPSRPASRNAFDENDIISSADAELAHVRREPTATDALRSGSNVQGSSAAQNIGQPASYSYAAALGSSLSRSTTPDPQLVARAPSPCIMPIGGGRAVASEKRGIASPDAFNGVSSGINDSADLVAALSGMNLSADDVLDGENHLPSQVESDIDNHQRYLFGRQGGQDHGKQHAYLKKSESAHLQNLGKSRSGSDLNNPSLDRQVELQKSTVPSNNSYFKGLPTSHFSRGGSLPPQYQPLDTNSSFTNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPGMDSRILGGGLASGAAAPSDMHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYTAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTHHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGSGSPVRHNDLNMRFTSGMRNFAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLPGHVLNLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGTYSVHVIPHLHSHTFLYFGIRVRALGALSSERAMQRKSAIEMDAMRKKHEADLEALRKKQAEMQTHQ 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 848 884 IPR001313 GO:0003723
Ssu3g2654 1095 MobiDBLite consensus disorder prediction 424 446 - -
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 704 739 IPR001313 GO:0003723
Ssu3g2654 1095 PANTHER PUMILIO HOMOLOG 1-RELATED 30 1032 - -
Ssu3g2654 1095 SMART pum_5 704 739 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 740 775 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 848 884 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 776 811 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 963 998 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 921 956 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 885 920 IPR001313 GO:0003723
Ssu3g2654 1095 SMART pum_5 812 847 IPR001313 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 740 775 IPR001313 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 684 1024 IPR033133 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 921 956 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Nucleic acid binding protein NABP 297 703 IPR012940 -
Ssu3g2654 1095 Gene3D - 684 1029 IPR011989 -
Ssu3g2654 1095 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 30 1032 - -
Ssu3g2654 1095 Coils Coil 1067 1094 - -
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 776 811 IPR001313 GO:0003723
Ssu3g2654 1095 SUPERFAMILY ARM repeat 687 1021 IPR016024 -
Ssu3g2654 1095 MobiDBLite consensus disorder prediction 132 182 - -
Ssu3g2654 1095 CDD Pumilio 700 1020 IPR033712 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 957 998 IPR001313 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 812 847 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 708 742 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 852 887 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 780 813 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 971 1000 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 891 922 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 823 846 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 744 775 IPR001313 GO:0003723
Ssu3g2654 1095 Pfam Pumilio-family RNA binding repeat 926 959 IPR001313 GO:0003723
Ssu3g2654 1095 ProSiteProfiles Pumilio RNA-binding repeat profile. 885 920 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2654 Ssu-Chr3 80202478 80211543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2654 K17943 - gmx:100803806 1806.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2654 3 80202478 80211543 Ssu3g2654 3 80202478 80211543 ECH