Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2651 ATGATCACAACTGTTCCTTCATCACCAGCACTTTTTGTGGCATTCCTCTTTGCTACCAGCTTCCTCTGGTCCTTCCCCGAGCTTGTTCTCGCTACTTCAAAACATGGAAGCGTTACAAGGCACTACAAGTTTGATATAAGGTTGAGGAATGTTACGACGCTGTGCCACACAAAGAGCATTGTTACCGTGAATGGAAAGTTCCCTGGGCCTCGAGTAGTTGCAAGAGAAGGTGACAGAATAGTAGTTAAGGTGGTTAATCATGTTCCCAACAATGTCAGCATACACTGGCATGGAGTGAGACAGCTTCGAAGTGGATGGGCAGATGGTCCATCTTACATAACTCAATGCCCCATTCAAACTGGCCAGAGTTATGTGTACAACTTCACCATTGTTGGGCAAAGAGGAACCCTATTCTGGCATGCTCACTTTTCTTGGTTAAGAGCCACTCTGTATGGACCTCTAATCCTCCTCCCCAGGCGCAACGAATCTTACCCTTTTGAGAAACCCTACAAGGAAGTTCCCATCCTCTTTGGTGAGTGGTGGAACGCAGATCCGGAGGCTGTCATTGCACAAGCCCTTCAGACGGGGGCTGCCCCAAATGTTTCTGATGCTTACACTATTAACGGACTTCCTGGACCGCTCTACAATTGCTCTAATAACGAGACAGACACGTTCAGGTTAAAGGTGCAACCAGGGAAGACATATCTTCTTCGTTTGGTCAATGCTGCACTCAATGACGAACTGTTTTTCAGCATAGCAAACCACACCCTGGTAACGGTTGAAGCTGATGCTAGTTACGTTAAACCTTTCGAGTCCGAGATCATAGTGATTGGGCCAGGACAAACCTCAAACGTTCTGTTAAAGACAAAACCCGAGTACCCAAACGCTAGTTTCTTCATGCTAGCAAGGCCATATTTCACTGGCATGGGCACTTTTGACAATTCCACAGTTGCTGGCATTCTAGAGTACAAGAATCCACTTGCCCCCAGAAACATTCCCTCTTTGAAACCCTCTCTTCCAGCCATCAACGACACTTCCTTCGTTGCCAACTTCACTAGCAAATTCCGCAGTTTGAACACTGCCAAGTACCCTGCCAATGTGCCTCAAACCGTtgacaagagctttttcttcaCGGTCGGACTTGGGACAAGTCCTTGCCCCAAAAACCAAACATGCCAAGGACCAAACAATAGTTCAAAGTTTGCAGCCTCCATGAACAACATATCTTTCGCTCTTCCTTCTATAGCACTTCTTCAACAACATTTCTTTGGGCAGGCTAATAATGGAATTTACACCACCGACTTCCCTGCTACGCCACTCATGCCATTCAACTACACGGGGACCCCACCGAACAACACAAGGGTCACGAATGGAACCAAGACGGTGGTGGTACCCTTTAACACAAGCGTGCAGGTGGTGCTTCAGGACACTAGCATTTTGGGATCTGAGAGCCATCCATTGCACCTTCATGGTTATAATTTCTATGTTGTGGGTCAAGGCTTTGGGAACTTTAATCCTAACACTGACCCTCCTAAATTCAATCTCGTTGATCCCGTTGAAAGGAACACTGTTAGTGTGCCCTCTGGTGGTTGGGTTGCAATCCGATTCCTTGCTGACAACCCAGGTGTTTGGCTGATGCACTGCCACTTTGATGTCCACCTTAGTTGGGGGTTGAGGATGGCTTGGACTGTTAAGGATGGGAAGCTCCCTAATCAGAAGTTGCCTCCTCCACCAGTTGATCTTCCCAAGTGTTGA 1755 0.4689 MITTVPSSPALFVAFLFATSFLWSFPELVLATSKHGSVTRHYKFDIRLRNVTTLCHTKSIVTVNGKFPGPRVVAREGDRIVVKVVNHVPNNVSIHWHGVRQLRSGWADGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLRATLYGPLILLPRRNESYPFEKPYKEVPILFGEWWNADPEAVIAQALQTGAAPNVSDAYTINGLPGPLYNCSNNETDTFRLKVQPGKTYLLRLVNAALNDELFFSIANHTLVTVEADASYVKPFESEIIVIGPGQTSNVLLKTKPEYPNASFFMLARPYFTGMGTFDNSTVAGILEYKNPLAPRNIPSLKPSLPAINDTSFVANFTSKFRSLNTAKYPANVPQTVDKSFFFTVGLGTSPCPKNQTCQGPNNSSKFAASMNNISFALPSIALLQQHFFGQANNGIYTTDFPATPLMPFNYTGTPPNNTRVTNGTKTVVVPFNTSVQVVLQDTSILGSESHPLHLHGYNFYVVGQGFGNFNPNTDPPKFNLVDPVERNTVSVPSGGWVAIRFLADNPGVWLMHCHFDVHLSWGLRMAWTVKDGKLPNQKLPPPPVDLPKC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2651 584 Gene3D - 170 361 IPR008972 -
Ssu3g2651 584 SUPERFAMILY Cupredoxins 35 190 IPR008972 -
Ssu3g2651 584 Gene3D - 386 584 IPR008972 -
Ssu3g2651 584 Pfam Multicopper oxidase 446 567 IPR011706 GO:0005507|GO:0016491
Ssu3g2651 584 PANTHER LACCASE 22 584 - -
Ssu3g2651 584 Gene3D - 27 157 IPR008972 -
Ssu3g2651 584 CDD CuRO_3_LCC_plant 430 567 IPR034289 GO:0005507
Ssu3g2651 584 Pfam Multicopper oxidase 49 159 IPR011707 GO:0005507
Ssu3g2651 584 ProSitePatterns Multicopper oxidases signature 2. 547 558 IPR002355 GO:0005507
Ssu3g2651 584 CDD CuRO_1_LCC_plant 42 158 IPR034288 GO:0005507
Ssu3g2651 584 SUPERFAMILY Cupredoxins 167 358 IPR008972 -
Ssu3g2651 584 SUPERFAMILY Cupredoxins 364 584 IPR008972 -
Ssu3g2651 584 CDD CuRO_2_LCC_plant 173 323 IPR034285 -
Ssu3g2651 584 Pfam Multicopper oxidase 172 325 IPR001117 -
Ssu3g2651 584 ProSitePatterns Multicopper oxidases signature 1. 542 562 IPR033138 -
Ssu3g2651 584 TIGRFAM laccase: laccase 39 584 IPR017761 GO:0046274|GO:0048046|GO:0052716
Ssu3g2651 584 PANTHER MULTI-COPPER OXIDASE 22 584 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2651 Ssu-Chr3 80153807 80156968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2651 K05909 - gmx:100811833 1133.63