Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2650 ATGATTTTTTCAAGGATTGGGCGCTCCCTGTCGCGCTCGTCTCGCGCTAGAAATTTTTTGCACGGTGATGCGAGATTGGGAGCGCCACGGACGAATGCGTATTCCGACGGAGCAGAAGGGGTATTGGGGTTTGTTAGGGGCTACGTGTCTTCTGCCAGAGCTCGCAGTAATGGCATCATTTCCAATTGGCCtgattttaaatcggttgcagcAAACCCTAGGATTCGCCGATTGTTTTCTAGCGAAGCCCCAAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAGGGAAACGACAAAAAATATGAGTCCAAAGATAATTCAAACACAAACACAGATGATCACGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAATCACCCCATTATTGGTGATGGGGCTATTTCTCACATCCTTTTCTTTTGGTCCTCGCGAACAGCAGCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATGTTGTTGTCTCCAATAAATCAGTTGCCAAAGTATATGTAAGGAACTCTCCCCGCAACCAAACAGACAATGAAGTAGTCCAAGGGACCCTACCTGCAAAGGGATCTGGAGGCCAGTATagatattatttcaatattggAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCGCAAGAAGCACTAGGCATTGACTCTCATGATTTTGTGCCTGTTACATATTCTTCTGAAATGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTGTACATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGTGGCGGTGGCGGCAGTAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACTAAAGTAGACAAAAATGCCAAAAACAAGGTCTATTTTAAAGATGTAGCTGGCTGCGATGAGGCAAAGGAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTGGGTCCTCCAGGCACGGGAAAAACCCTTTTAGCGAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCTAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGAGGACGTGGAGGTTTTTCTGGAGCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTGTTGGCAGGAACAAATAGACCTGATATCTTAGACAAAGCTCTGCTTAGGCCTGGGCGATTTGACCGCCAGGTAACAATTGATATACCTGATATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAGAAGATCAAACTTGACCGTGAGCCTTCATATTATTCTCAAAGGCTTGCAGCCCTTACACCTGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAAATGAACAAACACAAGTCACAATGGAACATTTTGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAAAAGAAGAACAAGGTAATAAGCAAGCTGGAAAGACGCACAGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGCCTGGTTCTTGGAACATGCTCAGCCCTTGTTGAAAGTAACTATTGTTCCTCGTGGCACAGCAGCTCTTGGGTTTGCCCAATATGTTCCGGACGAGAACCTTCTCAGGACAAAGGAGCAGCTTTTTGATATGACTTGTGTGACACTTGGTGGTCGGGCCGCTGAGCAGGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTTTATGGTTTCAGCGACAAAGTGGGCCTCCTCTCTTTCCCTCCAAAAGAGGACTCATTTGAGCTGTCCAAACCATACAGCAACCAAACTGCTGCAATCATCGATAACGAAGTGCGTGATTGGGTGAAGAAAGCATATGAACGCACAGTACAGCTTGTCGAGGAACACAAGGAGCAAATAGCTCAAATTGCAGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGATGACTTGGTTCAGGTTTTGGGCGAGCGGCCATTCAAGGCTAGTGAACCCACCAATTATGACAGATTTAAGCAAGGTTTTCTAGAGGAGGAGGAAAAGGTCGCAGAGAGCACTGTAGATGCGCCTGAGGAAGGTGGCGGGTCTTCACCATTAGAGCCCCAGGTCGTTCCCACATAG 2424 0.4422 MIFSRIGRSLSRSSRARNFLHGDARLGAPRTNAYSDGAEGVLGFVRGYVSSARARSNGIISNWPDFKSVAANPRIRRLFSSEAPKKKNYENFYPKEKKEVPKGNDKKYESKDNSNTNTDDHGNFQEAFMKQVQNLITPLLVMGLFLTSFSFGPREQQQISFQEFKNKLLEPGLVDHVVVSNKSVAKVYVRNSPRNQTDNEVVQGTLPAKGSGGQYRYYFNIGSVESFEEKLEEAQEALGIDSHDFVPVTYSSEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGGGGSKGARGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKEEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQVTIDIPDIKGRDQIFQIYLKKIKLDREPSYYSQRLAALTPGFAGADIANVCNEAALIAARNEQTQVTMEHFEAAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAAWFLEHAQPLLKVTIVPRGTAALGFAQYVPDENLLRTKEQLFDMTCVTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPKEDSFELSKPYSNQTAAIIDNEVRDWVKKAYERTVQLVEEHKEQIAQIAELLLEKEVLHQDDLVQVLGERPFKASEPTNYDRFKQGFLEEEEKVAESTVDAPEEGGGSSPLEPQVVPT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2650 807 MobiDBLite consensus disorder prediction 772 788 - -
Ssu3g2650 807 Pfam Peptidase family M41 573 755 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu3g2650 807 PANTHER ATP-DEPENDENT PROTEASE 30 806 - -
Ssu3g2650 807 MobiDBLite consensus disorder prediction 90 122 - -
Ssu3g2650 807 Pfam FtsH Extracellular 138 243 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Ssu3g2650 807 SMART AAA_5 352 492 IPR003593 -
Ssu3g2650 807 CDD AAA 353 489 - -
Ssu3g2650 807 Gene3D - 491 574 - -
Ssu3g2650 807 Gene3D - 142 255 - -
Ssu3g2650 807 MobiDBLite consensus disorder prediction 90 116 - -
Ssu3g2650 807 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 256 756 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu3g2650 807 Gene3D - 300 489 IPR027417 -
Ssu3g2650 807 ProSitePatterns AAA-protein family signature. 460 478 IPR003960 GO:0005524|GO:0016887
Ssu3g2650 807 Gene3D Peptidase M41 575 774 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu3g2650 807 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 30 806 - -
Ssu3g2650 807 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 782 IPR005936 GO:0004176|GO:0004222|GO:0016020
Ssu3g2650 807 Pfam ATPase family associated with various cellular activities (AAA) 357 488 IPR003959 GO:0005524|GO:0016887
Ssu3g2650 807 Pfam AAA+ lid domain 519 558 IPR041569 -
Ssu3g2650 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 563 IPR027417 -
Ssu3g2650 807 SUPERFAMILY FtsH protease domain-like 573 763 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu3g2650 807 MobiDBLite consensus disorder prediction 766 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2650 Ssu-Chr3 80130256 80135789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2650 1 807 Miscellaneous Gene Families AT2G29080 75.550 0.0 1188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2650 K08956 - gmx:100806656 1395.56