Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2631 ATGTCCATAGCGTCGAACAAAACTAACAGCAGCAAAATGAGCACGCCCTTGTTCCATGAATTCAAAAAGCAAGCTTCTTTCTTCCTCAAGGAGAAAATCAAGACTGCTAGATTAGCTCTAACAGATGTCACCCCTGCAGAACTGATGACAGAAGAGGGAACTAGTGGAAATCCATGGGCCCCAGATTCCAGAACTCTCAGATCAATTTCAAGGGCAGCTTTTGAGCTAGAAGATTATTGGAGGATTGTGGAGATTCTGCATAAAAGgttgcttaaatttgaaaagaaaaattggaggGCCTCTTACAATTCCCTGATCGTGCTTGAGCACCTGTTGACTCATGGACCAGAGAGTGTTGCTGAGGAATTCAAAAGTGACAAAGATGTTATTAACCAGATGAAAGGTTTTCAGTATATTGATGACACTGGGTTTAATTGGGGCCTAACTGTCAGAAAGAAATCAGAGAGGATAATGAAACTGCTGGAAGAAGGAACTCTTCTCaaggaagagagaaaacaagCTAGAAGGTTATCTAGAGGAATTGAAGGTTTTGGAAGTTTCTCCCATCGGTCAACTCCAGCACAAGGCATTCTACGTGAAAAATCAATGCCAACCACACTTGGGAGATGTAACTCAGACTTTAACAACCATGAAGATCGGGAAAACCAGTCCTCTTGTTCAAACAATGGTGTGGACACAGTAGCTGTCAAGTCTCCTAGTACTAGTGGTGTGGAAACCAAGGGATACCAGGATGATCTTGGCAACAATCAAATGCTTCAGAAATCTGAAACAAATTCTAAGGAAAACATGGAACCTAGCAAGGAGGAGTTTCATCTATGGAACTTGAATGGGGAGTCCAAACCACTCTTGGATTGTGGGGAAGAGGATTCCAGGCTTGGGATCATCAGAGCAGAAGATGATCACCCCTTTAATTCAACAGAAATGCATGCCACTGCCTCCCTGCTTTCTGCTAGAGGCGGAATACTACAAGGGTGTTGA 999 0.4134 MSIASNKTNSSKMSTPLFHEFKKQASFFLKEKIKTARLALTDVTPAELMTEEGTSGNPWAPDSRTLRSISRAAFELEDYWRIVEILHKRLLKFEKKNWRASYNSLIVLEHLLTHGPESVAEEFKSDKDVINQMKGFQYIDDTGFNWGLTVRKKSERIMKLLEEGTLLKEERKQARRLSRGIEGFGSFSHRSTPAQGILREKSMPTTLGRCNSDFNNHEDRENQSSCSNNGVDTVAVKSPSTSGVETKGYQDDLGNNQMLQKSETNSKENMEPSKEEFHLWNLNGESKPLLDCGEEDSRLGIIRAEDDHPFNSTEMHATASLLSARGGILQGC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2631 332 SUPERFAMILY ENTH/VHS domain 24 171 IPR008942 -
Ssu3g2631 332 ProSiteProfiles ENTH domain profile. 38 171 IPR013809 -
Ssu3g2631 332 CDD ENTH 46 162 - -
Ssu3g2631 332 PANTHER EPSIN/ENT-RELATED 16 324 - -
Ssu3g2631 332 Gene3D - 40 187 IPR008942 -
Ssu3g2631 332 SMART enth_2 44 171 IPR013809 -
Ssu3g2631 332 MobiDBLite consensus disorder prediction 221 256 - -
Ssu3g2631 332 MobiDBLite consensus disorder prediction 212 256 - -
Ssu3g2631 332 PANTHER EPSIN-2-LIKE 16 324 - -
Ssu3g2631 332 Pfam ENTH domain 44 165 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2631 Ssu-Chr3 79885678 79887034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2631 K12471 - gmx:100811093 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2631 3 79885678 79887034 Ssu3g2631 3 79885678 79887034 ECH
Ssu8g0464 8 7314710 7316145 Ssu3g2631 3 79885678 79887034 PCT