Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2617 ATGGCTCGCTCATTGTTCCTATGCTCATTCTTCATCCTCGCTCTCACCACCCTCTCCACACACACCCACGCCCTCATCCTAACCCTCGTCAACAACTGCAACTACACCGTCTGGCCCGCCATCCAGCCCAACGCCGGCCACCCAGTCCTCGCCGGCGGCGGCTTCACCCTCCACACCCTCACTCACCTCTCCATCCCCGTCCCGGACGTCCACTGGTCGGGCCGGGTCTGGGCCCGCACCGGCTGCGCGTACTCCGGGACCGCCTTCTCCTGCGCCAGCGGCGACTGCGGCGGCCGCCTCCAGTGCAACGGCGCCGGCGGCGCCGCCCCCGCCACCCTGGCGCAGCTCGAGGCTCACCACGGCAACGCCGACTTCGTTTCCTACGGCGTGAGCCTCGTGGACGGTTTCAACGTCCCCTTGACGGTCACCCCGCACGAGGGCAAAGGCGTGTGCCCCGTGGTTGGGTGTCGCCCGGACCTGCTCGCCACGTGTCCCCCCGTGCTGCAGCACCGTGTTCCCGCGGGTCACGGACCCGTGGTGGCGTGTAAGAGTGGGTGCGAGGCGTTTCACACGGACGAGCTGTGCTGCAGGAACCACTACAATAACCCCCAAACGTGTAAGGGCTCTGTGTACTCAACGTTCTTCAAGCACGCCTGCCCTGCCACGTTTACCTACGCGCATGACACGCCTTCGCTCATGCACCAGTGTTCCTCCCCGCGTGAGCTGAAGGTTATCTTTTGCCATTGA 747 0.656 MARSLFLCSFFILALTTLSTHTHALILTLVNNCNYTVWPAIQPNAGHPVLAGGGFTLHTLTHLSIPVPDVHWSGRVWARTGCAYSGTAFSCASGDCGGRLQCNGAGGAAPATLAQLEAHHGNADFVSYGVSLVDGFNVPLTVTPHEGKGVCPVVGCRPDLLATCPPVLQHRVPAGHGPVVACKSGCEAFHTDELCCRNHYNNPQTCKGSVYSTFFKHACPATFTYAHDTPSLMHQCSSPRELKVIFCH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2617 248 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Ssu3g2617 248 PIRSF PR5 1 248 IPR001938 -
Ssu3g2617 248 Pfam Thaumatin family 31 247 IPR001938 -
Ssu3g2617 248 CDD TLP-PA 26 247 - -
Ssu3g2617 248 Gene3D Thaumatin 26 247 IPR037176 -
Ssu3g2617 248 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Ssu3g2617 248 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Ssu3g2617 248 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Ssu3g2617 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Ssu3g2617 248 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Ssu3g2617 248 PANTHER OS03G0233200 PROTEIN 5 248 IPR001938 -
Ssu3g2617 248 SMART tha2 27 248 IPR001938 -
Ssu3g2617 248 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 5 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2617 Ssu-Chr3 79682330 79683076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2617 1 247 Receptor kinase-like Gene Family AT5G38280 36.759 3.01e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2617 - - gmx:100818233 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2617 3 79682330 79683076 Ssu3g2617 3 79682330 79683076 ECH