Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2606 ATGGCACCAAAGGCAGAGAAGAAGCCGGCGGAGAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGGAGAGAAGGCTCCTCCGGCGGAGAAGAAGCCAAAGGCAGGGAAGAAGCTTCCGAAGGAAGGAGGAGCCGGCGgtgacaagaagaagaagaggagcaAGAAGAGCGTAGAGACATACAAGATCTACATCTTCAAGGTTCTGAAACAGGTTCACCCAGACATTGGTATCTCGAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGATATATTCGAGAAGCTTGCCCAGGAATCTTCTAGACTTGCCCGCTACAACAAAAAGCCCACCATCACTTCCAGGGAAATTCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAATTGGCCAAGCACGCCGTCTCCGAGGGTACCAAGGCCGTGACCAAGTTCACTAGCTCTTAA 447 0.5123 MAPKAEKKPAEKKPAEEKKSTVGEKAPPAEKKPKAGKKLPKEGGAGGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2606 148 PANTHER HISTONE H2B 5 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 PANTHER HISTONE H2B.1-RELATED 5 148 - -
Ssu3g2606 148 MobiDBLite consensus disorder prediction 1 57 - -
Ssu3g2606 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 Gene3D Histone, subunit A 23 148 IPR009072 GO:0046982
Ssu3g2606 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 Pfam Core histone H2A/H2B/H3/H4 2 124 IPR007125 GO:0003677
Ssu3g2606 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2606 148 SUPERFAMILY Histone-fold 40 148 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2606 Ssu-Chr3 79543196 79570852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2606 K11252 - sspl:121741882 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2606 3 79543196 79570852 Ssu3g2606 3 79543196 79570852 ECH