Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2605 ATGGCTGCTCCACCGGCAAGGGCTCGTGCCGATTACGATTTTCTCATCAAGCTTCTCTTGATCGGTGACAGCGGTGTTGGAAAAAGTTGCCTCCTTCTGCGTTTCTCTGATGGTTCTTTCACTACTAGTTTCATCACAACTATAGGaattgattttaagataAGAACCATTGAGCTTGATGGCAAACGGATCAAGCTCCAAATTTGGGATACTGCTGGGCAGGAGCGGTTTCGGACAATTACAACTGCTTACTATCGTGGTGCGATGGGCATATTGTTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAATTGGATTCGCAATATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCTGATATGGACGAAAGCAAAAGGGCTGTGCCTACATCCAAGGGCCAAGCACTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAACGTGGAGGAAGTTTTCTTCTCAATAGCTAGAGATATAAAACAAAGGCTGGCTGACACTGACTCCAAGGCAGAGCCATCAACAATCAAAATCAACCAAGATCAGTCAGGAGGGGCTGGGCAGGCTGCACAAAAATCGGCTTGTTGTGGTTGA 645 0.4341 MAAPPARARADYDFLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPSTIKINQDQSGGAGQAAQKSACCG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2605 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Ssu3g2605 214 SMART rab_sub_5 16 180 - -
Ssu3g2605 214 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Ssu3g2605 214 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Ssu3g2605 214 Gene3D - 9 213 IPR027417 -
Ssu3g2605 214 TIGRFAM small_GTP: small GTP-binding protein domain 16 170 IPR005225 GO:0005525
Ssu3g2605 214 CDD Rab8_Rab10_Rab13_like 13 180 - -
Ssu3g2605 214 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Ssu3g2605 214 ProSiteProfiles small GTPase Ras family profile. 6 214 IPR001806 GO:0003924|GO:0005525
Ssu3g2605 214 SMART ran_sub_2 21 214 - -
Ssu3g2605 214 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Ssu3g2605 214 PANTHER LD44762P 1 213 - -
Ssu3g2605 214 SMART arf_sub_2 1 181 - -
Ssu3g2605 214 MobiDBLite consensus disorder prediction 189 206 - -
Ssu3g2605 214 PRINTS Transforming protein P21 ras signature 155 177 - -
Ssu3g2605 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Ssu3g2605 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Ssu3g2605 214 PRINTS Transforming protein P21 ras signature 119 132 - -
Ssu3g2605 214 PRINTS Transforming protein P21 ras signature 16 37 - -
Ssu3g2605 214 PANTHER BNAA07G37610D PROTEIN 1 213 - -
Ssu3g2605 214 SMART ras_sub_4 17 180 - -
Ssu3g2605 214 MobiDBLite consensus disorder prediction 185 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2605 Ssu-Chr3 79518570 79521721 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2605 K07901 - gmx:100779203 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2605 3 79518570 79521721 Ssu3g2605 3 79518570 79521721 ECH
Ssu8g0485 8 7574472 7578108 Ssu3g2605 3 79518570 79521721 ECH
Ssu8g0485 8 7574472 7578108 Ssu3g2605 3 79518570 79521721 PCT