Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2600 ATGTCGGGGAGTTCGAGTTCCAGGGGAAGAATAACGACGGAGCTTCAAATCCCGAAGAAATGGACGGACAGAGAAACCAGTCCAGAGAGAACCAAGGTCTGGGCCGAGCCCAAGCCCAAAACGGCGAGAAAAGTCTCCGTCGTTTACTACCTCTCCCGGAACGGCCAGCTCGAGCACCCTCATTTCATGGAGGTTCCTCTCTCTTCGCCTCACGGACTCTACCTCAAAGACGTAATCAACCGTTTGAACGCTCTCCGAGGGAAAGGCATGGCCACCATGTACTCTTGGTCCGCCAAACGGAGCTACAAAAACGGCTTCGTTTGGCATGATTTGTCGGAGAACGATTTCATCTACCCGACGCAGGGGCAAGACTACGTTCTCAAAGGATCGGAGATTCTCGAGCACGCTGCCACCGCCGGCGGGAGGGTTAACAAATCGGAGGAAGACTCCGATTCGCCGGTGGCGATCACGCGGCGGCGGAACCAGTCGTGGAGCTCCATTGACCTGAACGAGTACCGAGTTTACAAGTCGGAATCGTTCGGTGACTCGGCTGGGAAAATCGCAGCCGACGCAGCGACTCAGACGGAGGACAAGCGGAGGCGAAGGAGGGCGGTGAGGGAGGAAGAAGCGGAAGAGAAGAATGGAATTGAAGCGGAAGTGGAGGGAGAGAGGGTCCCGCACGTGACTTGTGACAATAATAATCACAGTACGGAACTGAGTAGGGAGGAGATCTCGCCTCCACCGTCCGATTCGAGCCCGGAGACGCTGGAGACGCTGATGAAGGCGGATGGACGGCTGGGATTGCGGTCATCGGAATCCGAGAAGGGGAATCTGACGGTCGAGAGTTGTCCTAGTGGGAGGATGAGAGCCTCGTCGGTTCTGTTGCAATTGTTATCATGCGGTGCGGTGTCTTTTAAGGAGTGTGGGGCCAACTCGGTGAAGGATCAAGGGTTCTCGTTGGTTGGGCACTACAAGCCCAGGATGCCGCGCGGAGCAGGGGATCATGCGGGAAAGGAGAAGGGGACCTCGATGGAAATTCCGGATTTGAGCGGGGTAAGGTTGGaagataaagaatattttagtgCGAGCTTGATCGAAACCAAGAAAGTGGAAGCCCCTGCTTTGAAGAGGTCTTCTTCTTACAACGCAGATAGTGCTCCTTGCAGCGGTTCCCGGTTACAAATCGTCGAGCATGAAGGAGAGGTAGTGCGGGCAAAGTGCATACCGCGGAAGTCTAAGACACTACCAACAAAGAAAGAGGAGGGTGCTTCCATGCATAGTGTTAGCAGTGGCCAACATGGGAGCAAAAGATTTGACGCACAACAATAA 1329 0.5425 MSGSSSSRGRITTELQIPKKWTDRETSPERTKVWAEPKPKTARKVSVVYYLSRNGQLEHPHFMEVPLSSPHGLYLKDVINRLNALRGKGMATMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYVLKGSEILEHAATAGGRVNKSEEDSDSPVAITRRRNQSWSSIDLNEYRVYKSESFGDSAGKIAADAATQTEDKRRRRRAVREEEAEEKNGIEAEVEGERVPHVTCDNNNHSTELSREEISPPPSDSSPETLETLMKADGRLGLRSSESEKGNLTVESCPSGRMRASSVLLQLLSCGAVSFKECGANSVKDQGFSLVGHYKPRMPRGAGDHAGKEKGTSMEIPDLSGVRLEDKEYFSASLIETKKVEAPALKRSSSYNADSAPCSGSRLQIVEHEGEVVRAKCIPRKSKTLPTKKEEGASMHSVSSGQHGSKRFDAQQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2600 442 MobiDBLite consensus disorder prediction 229 255 - -
Ssu3g2600 442 Pfam Protein SOSEKI, plant 45 138 IPR010369 -
Ssu3g2600 442 Pfam Protein SOSEKI, plant 143 385 IPR010369 -
Ssu3g2600 442 PANTHER OS01G0839200 PROTEIN 11 412 - -
Ssu3g2600 442 MobiDBLite consensus disorder prediction 423 442 - -
Ssu3g2600 442 MobiDBLite consensus disorder prediction 192 228 - -
Ssu3g2600 442 PIRSF UCP031043 13 431 IPR021182 -
Ssu3g2600 442 MobiDBLite consensus disorder prediction 186 255 - -
Ssu3g2600 442 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 11 412 IPR010369 -
Ssu3g2600 442 MobiDBLite consensus disorder prediction 1 29 - -
Ssu3g2600 442 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2600 Ssu-Chr3 79479883 79483049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2600 - - gmx:100779732 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2600 3 79479883 79483049 Ssu3g2600 3 79479883 79483049 ECH