Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2598 ATGTCTCGTATCTCCACACTCTATCTTCTCGCTTACAACTCCTTTCAGGCCATTGGATGGACTCTTTCcttatttaagattttgtacAATCTTCTCGCCACTGCCTCCATCAACGGAACCTACGCTTCCGCCGGCAACTTAATCTGTTTTCTGCAATGCGCCGCGTTCTTGGAAGTTATACACGGAGCCATTGGCATTGTGCCCAGCGGGGTGTTGCTTCCTCTTTTGCAGTGGGGAGGAAGAACGCACTTTGTGCTTGCCATTGTTCGGAAGCTCGACGAGCTCCAGGAATTACCTTCAGTTTTTATCACTTTTCTTGCATGGAGCATGGGTGAGGTCATTAGATATTCACATTATGCTTTCGGTTGTTTGGGAAATTGTCCTTCTTGGATGACCTATCTCAGgTACACTGCGTTTATTGTGCTGTATCCTTTGGGAGTGGGTCCTGGTGAAATATGGATTATGTACCAGGCGCTTCCAATtataaagaagaagaatctcTATGCAGATTCCTTTTCAGGCCTCCCATTTAGTTATTATGATTTCCTTAGGGTTGTTCTTGTAGTTTACCCATTCCTCTGGTTCAAACTTTACCTGCATATGTTCAAGCAACGACGTACAAAACTTTATAAACGCCATGGCAAGAAAAGGGCATGA 657 0.4277 MSRISTLYLLAYNSFQAIGWTLSLFKILYNLLATASINGTYASAGNLICFLQCAAFLEVIHGAIGIVPSGVLLPLLQWGGRTHFVLAIVRKLDELQELPSVFITFLAWSMGEVIRYSHYAFGCLGNCPSWMTYLRYTAFIVLYPLGVGPGEIWIMYQALPIIKKKNLYADSFSGLPFSYYDFLRVVLVVYPFLWFKLYLHMFKQRRTKLYKRHGKKRA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2598 218 PANTHER PTPLA DOMAIN PROTEIN 4 215 IPR007482 -
Ssu3g2598 218 Pfam Protein tyrosine phosphatase-like protein, PTPLA 52 209 IPR007482 -
Ssu3g2598 218 PANTHER VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE 4 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2598 Ssu-Chr3 79420535 79423595 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2598 K10703 - gmx:100527607 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2598 3 79420535 79423595 Ssu3g2598 3 79420535 79423595 ECH