Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2586 ATGAAAGACACCGAAATGCAGTGCAGAGAGAGCGTCTTCATTGCTCTCTTTCAACATTACGGTCCCGAAAAAGCCGTTGAACTCTTCCACAGAATGACCCAGTTCAACTGCGTCCGCACGATACAGTCCTTCAACGCGCTTCTCAACGTTCTGGTCGACAAGGACCGGTTTGACGAGGCAAATGATGTTTTTGACCGATCCTATGAAATGGGTTTTCGTCCAAACACGGTCACGTTCAATATTATGGTGAAGGGGTGGTTGGCAAAGGGTGAGTGGAAGAAAGCATGCGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTTGTCACTTATAATAGTCTCATTGGGTTTTTGTGTAGGAAGGGTGATATGGATAAAGCAATGGCCTTGCTTGAGGACATGAACCAGAAAGGACGGCACGCAAATGAAGTAACGTATGCGCTGTTGATGGAAGGTTTGTGCTCTGTGGAGAAGTACGAGGAAGCTAAGAAGCTAATGTTTGATATGGCTTATCGCGGGTGTAAACCTCATCAGGTGAATTTTGGTGTGTTGATGAATGATCTTGGGAAGAGAGGAAAGGTTGAAGAGGCCAAGTCTTTGCTCCATGAGATGAAGAAGAGGCGGCTTAAGCCAGATGTTGTAACATACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAGTGGAAGCTTACAAGGTGTTAATGGAGATGCAGATTGGGGGATGTGAGCCCAATGCAGCTACATACAGAATGATGGTTGATGGTTTGTGCCAGATTGGGGATTTTGAGATAGGTCTGAGTGTTTTGAATGTAATGCTTACAAGTAGACATTGTCCACGTTCGGAAACATTTAATTGTCTGGTTGTTGGCCTGTTGAAATCAGGGAATATTGATGGTGCCTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGGTAGAATTTGAATTGGAGAGCTGGGAAACTATAATAAAGTCTGCCTGCGGTGAGGATAAGGGTGTTAGTGAGCTTATGACTATACTTAAATCTTTTCGTATATCTAATAGAATACATTAG 1068 0.4335 MKDTEMQCRESVFIALFQHYGPEKAVELFHRMTQFNCVRTIQSFNALLNVLVDKDRFDEANDVFDRSYEMGFRPNTVTFNIMVKGWLAKGEWKKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDMDKAMALLEDMNQKGRHANEVTYALLMEGLCSVEKYEEAKKLMFDMAYRGCKPHQVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAVEAYKVLMEMQIGGCEPNAATYRMMVDGLCQIGDFEIGLSVLNVMLTSRHCPRSETFNCLVVGLLKSGNIDGACFVLEEMEKRKVEFELESWETIIKSACGEDKGVSELMTILKSFRISNRIH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2586 355 Pfam PPR repeat family 109 158 IPR002885 -
Ssu3g2586 355 Pfam PPR repeat family 214 263 IPR002885 -
Ssu3g2586 355 Pfam PPR repeat family 41 85 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 112 141 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 147 179 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 43 76 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 185 216 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 288 318 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Ssu3g2586 355 TIGRFAM PPR: pentatricopeptide repeat domain 253 284 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Ssu3g2586 355 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 2 345 - -
Ssu3g2586 355 Gene3D Tetratricopeptide repeat domain 5 142 IPR011990 GO:0005515
Ssu3g2586 355 Pfam PPR repeat 18 37 IPR002885 -
Ssu3g2586 355 Pfam PPR repeat 184 211 IPR002885 -
Ssu3g2586 355 Pfam PPR repeat 288 316 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Ssu3g2586 355 PANTHER OS05G0548600 PROTEIN 2 345 - -
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Ssu3g2586 355 SUPERFAMILY TPR-like 49 238 IPR011990 GO:0005515
Ssu3g2586 355 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Ssu3g2586 355 Gene3D Tetratricopeptide repeat domain 281 350 IPR011990 GO:0005515
Ssu3g2586 355 Gene3D Tetratricopeptide repeat domain 209 280 IPR011990 GO:0005515
Ssu3g2586 355 Gene3D Tetratricopeptide repeat domain 143 208 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2586 23 336 Miscellaneous Gene Families AT4G11690 29.299 3.73e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2586 - - gmx:100776556 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2586 3 79265970 79267037 Ssu3g2586 3 79265970 79267037 ECH