Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2574 ATGGATGACGAATTGCTCGAGCTGCAGAGACAATTCGAATTCGCGCAGCAAGCCAAGTCGAGCATTCGATTATCGGAGCGAAACGTCGTCGAATTAGTCCAAAAACTGCAGCACCTCCAAATCATCGATTTCGAGCTTCTCCACACTGTGTCCGGCAAAGAATACATCACTCTCGATCAACTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCGTTTCTCTAATTGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGGAGAAGCAGGCTCAGAACGTTGTAGCGGAACACCGAGAACTGATGTTGACTCAAGGAGAAATCATGTCTGAGTCTTATTGGGACTCAATCGCAGAAGAGACTAACGAGAGGCTTCAGGAATGTAGTCAGATTGCGCTGACGGAACTAGCAGCGCAATTAAACGTAGGTTTGGACTTAGTTGCGTCCGTGTTGGAGCCGCGCCTTGGAACTATTGTGAAAGGAAGGCTTGAAGGCGGGCAGTTGTATACTCCTGCCTATGTGGCTCGTGTTAGTGCCATGGTTCGTGGCGCTACACGTGGCATCACGGTGCCGACAAATTTGACAGTGGTATGGAGCTCGTTGCAGCAATTACTGCAAGAAATTGATGGAACCAGTGGTTTGGCTGTGGAAGGATCTTTCTTCCAGTCGTTGTTTAATGGACTTGTGAAGGAGGCGAGGTTCTAG 717 0.4923 MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQHLQIIDFELLHTVSGKEYITLDQLRNEMVAEVKKLGRVSLIDLADATGVDLYYVEKQAQNVVAEHRELMLTQGEIMSESYWDSIAEETNERLQECSQIALTELAAQLNVGLDLVASVLEPRLGTIVKGRLEGGQLYTPAYVARVSAMVRGATRGITVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEARF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2574 238 Pfam E3 UFM1-protein ligase 1 4 237 IPR018611 GO:0061666|GO:0071569
Ssu3g2574 238 PANTHER E3 UFM1-PROTEIN LIGASE 1 1 236 IPR018611 GO:0061666|GO:0071569
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2574 1 235 EF-hand Containing Proteins AT3G46220 75.745 2.59e-124 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2574 K22755 - gmx:100808087 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2574 3 78727508 78728483 Ssu3g2574 3 78727508 78728483 ECH