Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2569 ATGTCTGGGCGTGGAAAGGGAGGCAAGGGTTTGGGGAAGGGAGGAGCGAAGCGTCACCGTAAGGTGTTGCGCGATAACATTCAGGGAATCACTAAGCCCGCGATTCGGCGTTTGGCTCGCAGGGGTGGCGTGAAGCGTATCAGTGGTCTCATCTACGAAGAGACACGTGGCGTGCTCAAGATCTTTCTGGAGAACGTGATTCGTGACGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACCGTTACGGCTATGGATGTTGTCTATGCCCTCAAGAGACAGGGAAGGACTCTATACGGATTTGGGGgctag 312 0.5385 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2569 103 Pfam Centromere kinetochore component CENP-T histone fold 39 96 IPR035425 -
Ssu3g2569 103 PRINTS Histone H4 signature 5 16 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PRINTS Histone H4 signature 20 39 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PRINTS Histone H4 signature 40 60 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PRINTS Histone H4 signature 62 76 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PRINTS Histone H4 signature 77 89 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PRINTS Histone H4 signature 89 100 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PANTHER HISTONE H4 1 103 - -
Ssu3g2569 103 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2569 103 CDD H4 18 101 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 SMART h44 16 90 IPR001951 GO:0003677|GO:0030527
Ssu3g2569 103 PANTHER HISTONE H4 1 103 - -
Ssu3g2569 103 SUPERFAMILY Histone-fold 3 102 IPR009072 GO:0046982
Ssu3g2569 103 ProSitePatterns Histone H4 signature. 15 19 IPR019809 GO:0000786|GO:0003677
Ssu3g2569 103 Gene3D Histone, subunit A 2 103 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2569 Ssu-Chr3 78685216 78685527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2569 K11254 - egr:104422505 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0509 8 8020680 8020991 Ssu3g2569 3 78685216 78685527 PCT