Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2553 ATGCTCAAATCGTTGATCCAGTTTATGCACGAAGAAAACAGCATCACGCATCCGACAATGAAACTCAAtaaaagagGGTCCCTGGCTGGTACCTGGGACACAGGTAGTCCTGATCGAGGAAAGGGAAAGTACTGCATTGGGTTAACAAACATACTGAATCCGTACTTTGCAAAACCAAACACTGTCTCGATGGCGGTGTCGCGAATCGTAGCCCATCCTCCGCCCTATCTCCACCGTCAATCTCCGCCGTCAGACGTCGTTACGTCTCTCAACCTCACCCTTCCCCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCTGTTCGGAGTCACGAGGAGAAGAAGAATGATCTCACCGACAATCCCCACTCCGTCGAATTGCGAACCACCCCCGACGACGTCCTTTCCAGAGATCTGCTCGCTCTTCCGCGGCCTTTGTCATCGACTCAGTTATCTGGTTCAGTCTCCGATGGTTCTCGGCTTCGTGTTGCGTATCAGGGGGTTCGCGGTGCTTACAGTGAGTCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAACAATTTGACACCGCTTTTGAAGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAAATATGCAGTCCGTCACTGTTTGATGGCCAACCACGGTGTTAAACTTGAAGATTTGAGCCGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTCGGATTGGTGCGAGAAGCAGTTGACGATACAGCTGGTGCCGCTAAGCATGTCGCCTTCCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCAGCTGCTGCAAAGATTTATGGCTTGAATATACTTGCTCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATAATTCCAGGCACTGGTAGGCCATTTAAGACAAGCATAGTGTTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAGGCCCTTGCTGTTTTTGCTTTGCGTCAGATTAACCTTACTAAGATTGAAAGTCGTCCTTTGCGCAACCAACCTCTACGAGCATCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTgttttatgttgattttgaaGCATCAATGGCTGATCTGAGTGCACAAAATGCCCTAAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCACGACATAA 1341 0.4668 MLKSLIQFMHEENSITHPTMKLNKRGSLAGTWDTGSPDRGKGKYCIGLTNILNPYFAKPNTVSMAVSRIVAHPPPYLHRQSPPSDVVTSLNLTLPPKRYRNLGIRASVRSHEEKKNDLTDNPHSVELRTTPDDVLSRDLLALPRPLSSTQLSGSVSDGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVKYAVRHCLMANHGVKLEDLSRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAFHKLQDAGAVASSAAAKIYGLNILAQDIQDDSDNVTRFLMLAREPIIPGTGRPFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASDDSNNSKYFDYLFYVDFEASMADLSAQNALRHLKEFATFLRVLGSYPVDTSTT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2553 446 MobiDBLite consensus disorder prediction 106 128 - -
Ssu3g2553 446 CDD PBP2_Ct-PDT_like 162 339 - -
Ssu3g2553 446 ProSitePatterns Prephenate dehydratase signature 2. 377 384 IPR018528 GO:0004664|GO:0009094
Ssu3g2553 446 PANTHER AROGENATE DEHYDRATASE 96 444 - -
Ssu3g2553 446 SUPERFAMILY Periplasmic binding protein-like II 162 343 - -
Ssu3g2553 446 SUPERFAMILY ACT-like 332 441 IPR045865 -
Ssu3g2553 446 ProSiteProfiles Prephenate dehydratase domain profile. 162 337 IPR001086 GO:0004664|GO:0009094
Ssu3g2553 446 CDD ACT_CM-PDT 349 440 - -
Ssu3g2553 446 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 96 444 - -
Ssu3g2553 446 Gene3D - 345 443 - -
Ssu3g2553 446 Pfam Prephenate dehydratase 163 339 IPR001086 GO:0004664|GO:0009094
Ssu3g2553 446 Gene3D - 246 325 - -
Ssu3g2553 446 ProSitePatterns Prephenate dehydratase signature 1. 313 335 IPR018528 GO:0004664|GO:0009094
Ssu3g2553 446 Gene3D - 157 245 - -
Ssu3g2553 446 ProSiteProfiles ACT domain profile. 351 440 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2553 Ssu-Chr3 78218759 78223889 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2553 K05359 - gmx:100787387 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2553 3 78218759 78223889 Ssu3g2553 3 78218759 78223889 ECH