Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2542 ATGGAGTGGGTGAAGATAAAGGATTGCGCGAGGGAGTTCATGTTTGGGGTGGCGGAGATGACGGTGGAGTTTGGAAAAGGGTGCAGAGACATAGTGAAGCAGAGTTTGGTCAACGAGGATTCTTATATTGTCAAAAACTTAGGAAGAGATTCCTACATTGGGAAGAGAGTGAGAGGACCCTGCGCTAAGCTTTTTACCAAATTGAGTTTCTTCAACCAGTACTTACCCGAGGATAAGGACCCTCTTCACGCGTGGTCCGTCATTTTCTTCGTTTCACTACTCGCCTTCTTAGCTTTGAAGGTGAATTTTGAGCATGATCCGTATGCTCCGCCGGTGAAGCAAGTGTTTGTGCATCCTCCTAGTGCTACTCGCATAGTGCTTCCTGATGGAAGATACATGGCGTATAAGGAGCAAGGTGTTTCATCTGAGAGAGCTAGGTTTACCGTGATTGCTCCTCATACTTTTCTTTCCTCCAGGCTTGCAGGGATTCCTGGAGTTAAAGGTTCGCTGCTGGAAGAGTTTGGCATTCGTTTGTTGACTTATGATCTTCCTGGTTTTGGTGAGAGTGATCCTCATCCCAAACGGAATCTGGAATCCTCGGCAATAGATATGGCATTTCTAGCGGATGCTCTTGGTGTGAACAAGTTTTGGATTGTTGGTTACTCAAGTGGTAGCATGCATGCATGGGCTGCACTTAGATACATTCCTGATAGGCTTGCTGGTGCAGCCATGTTTGCTCCCATGGTGAACCCATATGATCCTATCATGATGAAGGAAGAGAGACGAAGAACTTGGAACAAATGGACGCGAAGAAGAAAATTCATGTTCTTCTTAGCTCAGAGGTTTCCTAAACTTCTTGCTTTCTTCTATCAGCGAAGCTTCTTGTCGGGAAAGCATGATCAGGTTGATAGGTGGCTGTCGTTATCTCTGGGACGGAGGGATAAAGCACTGATGGAAGATCCAATCTATGAGGAATTCTGGCAAAGAGATGTGGAAGAATCAATCAGACAAAGAAATGCAAAACCCTTTGTGGAGGAAGCTGCTTTGCAGGGAATGGATGATAGAGTGGTTCCCCCATCAATGACTGATTTTGTGCACCGCGTGCTACCCGGAGCCGCAGTACATAAACTCCCATATGAAGGTCATTTCACCTATATCTACTTTTGTCATGAATGCCACAGACAGATATTTACTACACTTTTCGGAACCCCGCAAGGCCCACTCAGCATTTTTGTAGAAGTAGATCAAACTACCGTAGAAACCAATATTGAACAGGAAGAAGTAGTAAACGATGGTGATGATGCCACAAACTAG 1314 0.4528 MEWVKIKDCAREFMFGVAEMTVEFGKGCRDIVKQSLVNEDSYIVKNLGRDSYIGKRVRGPCAKLFTKLSFFNQYLPEDKDPLHAWSVIFFVSLLAFLALKVNFEHDPYAPPVKQVFVHPPSATRIVLPDGRYMAYKEQGVSSERARFTVIAPHTFLSSRLAGIPGVKGSLLEEFGIRLLTYDLPGFGESDPHPKRNLESSAIDMAFLADALGVNKFWIVGYSSGSMHAWAALRYIPDRLAGAAMFAPMVNPYDPIMMKEERRRTWNKWTRRRKFMFFLAQRFPKLLAFFYQRSFLSGKHDQVDRWLSLSLGRRDKALMEDPIYEEFWQRDVEESIRQRNAKPFVEEAALQGMDDRVVPPSMTDFVHRVLPGAAVHKLPYEGHFTYIYFCHECHRQIFTTLFGTPQGPLSIFVEVDQTTVETNIEQEEVVNDGDDATN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2542 437 PANTHER ALPHA/BETA FOLD HYDROLASE 9 350 - -
Ssu3g2542 437 Gene3D alpha/beta hydrolase 116 391 IPR029058 -
Ssu3g2542 437 PRINTS Alpha/beta hydrolase fold signature 175 190 IPR000073 -
Ssu3g2542 437 PRINTS Alpha/beta hydrolase fold signature 218 231 IPR000073 -
Ssu3g2542 437 PRINTS Alpha/beta hydrolase fold signature 346 360 IPR000073 -
Ssu3g2542 437 PANTHER ALPHA/BETA FOLD HYDROLASE 350 425 - -
Ssu3g2542 437 SUPERFAMILY alpha/beta-Hydrolases 120 385 IPR029058 -
Ssu3g2542 437 Pfam alpha/beta hydrolase fold 170 386 IPR000073 -
Ssu3g2542 437 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED 9 350 - -
Ssu3g2542 437 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED 350 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2542 Ssu-Chr3 78035575 78039702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2542 174 254 Acyl Lipid Metabolism Gene Families AT4G02340 34.884 4.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2542 - - gmx:100790561 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2542 3 78035575 78039702 Ssu3g2542 3 78035575 78039702 ECH