Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2540 ATGTCGGCACCGCAGAGATTTCTCTGCACTCTCTCCCACGCTATCCCTCTCTCTTCCCCTATCTCCACCTTCAAATCTAGGAAATTCCTTTTCCTTCCCTTCGCACACTCTTACCGGACCCTAACTCCCTTTCTCTCACCAATGCCTCGCAATCAGCGAAGTGACGCGCACGTGGAGCGAAGATGGCAAGAGAAAGCGAAAACCGAGGGGCAGTTATCGGCGGTGGGAGACGCAGCTGCAACTGCTGCGGAAACTGTTACTAACAAGCTTGCTGGAATGAACATTGGTGAAAACAGCGGGAAAACCGGGGGGCAAGATTTGATTGCGATTTGGAAACCTAAATCTTACGGAACTGCGAGTGGAGGCACTGTAACTGAAGTTGAAAATGGAGCAGGGGTTGAGGCAAGTGTGGCTTCAACGCAAAAGAGCAGTGGTAGTGGTTTGAGTAAGATATTTCGCGGTAATCTGTTAGAGAATTTCACTGTGGACAACTCCACGTTCACACGTGCACAAGTCAGAGCTACTTTCTAccctaaatttgaaaatgagaagTCGGATCAAGAGGTCCGGACCAGGATGATTGAGTTGGTATCAAAAGGGTTGGCTACCTTAGAGGTTTCACTTAAACACTCTGGCTCTCTTTTTATGTATGCGGGTCATGAAGGTGGAGCTTATGCAAAAAACAGTTTTGGAAACATATATACTGCTGTTGGTGTATTTGTTCTTGGACGGATGTTTCGTGAGGCTTGGGGAACTGAAGCTTCAAAAAAACAGgctgaatttaataattttcttgagAGAAACCATATGTGCATATCAATGGAACTAGTAACTGCTGTTCTTGGAGACCATGGACAGCGTCCCCAAGAAGATTATGCGGTAGTTACGGCAGTTACTGAACTGGGCAATGGAAAGCCAAAGTTCTATTCAACTCCTGAGATAATTGCTTTCTGCCGAAAATGGCGCCTTCCAACAAATCATGTGTGGTTGTTTTCAACAAGAAAATCAGCCACTTCTTTCTTTGCTGCCTATGATGCCTTATGTGAGGAGGGTACTGCAACGTCTGTATGCACGGCTCTTGATGAAATTGCAGACATCTCTGTACCAGGTTCGAAAGACCACGTAAAAGCACAAGGTGAAATTTTAGAGGGTCTTGTGGCTCGTCTTGTAAGTCATGAAAGTTCAAACCatatagagaaaattttgaaagaatttcCTCCACCACCTGTTGATGGAGTGGCCCTTGATTTCGGACCAAGTCTAAGGGAAATTTGCGCAGCAAATAGATCTGATGAAAAGCAGCAAATAAAAGCACTTCTCGACAGTGTTGGTGGTTCTTTTTGTCCTGACTACTCAGATTGGTTTGGGACTGATGCTGCTGATTATCATTCAAGAAATGCAGACAGATCTGTTCTTTCAAAGTTTTTACAAGCCCATCCTTCAGACTATTCAACTAAAAAGTTGCAGGAAATCGTTCGGTTGATGAGGGAAAAACGCTACCCTGCTGCATTCAAATGTTATCATAACTTCCACAAGGTTGATGCCATGTCAAGCGACAGTCTTTTCTATAAAATGGTCATTCATGTACATAGTGATTCTGCTTTTCGGCGATACCAAAAAGATATGAGGCTTAAACCAGGATTATGGCCACTATATCGAGGTTTTTTTGttgatatcaatttatttaaggcGAACAAGGAGAAAGCCGCTGAAATTTCTAAGAACAGTGTAAATGAATTTGGTAACGGCAGCTCTGAGAAAGATGACTTTGCTGATGAAGATGCAAATTTAATggtcaaattgaaatttcttacaTATAAGTTGCGAACCTTTCTCATTCGAAATGGCTTGCCAATTCTGTTCAAAGAAGGTCCTGGTGCTTACAAGGCTTATTACCTCAGACAAATGAAAATATGGGGAACCTCTTCAGCAAAGCAGAGAGAACTTAGCAAAATGCTTGATGAATGGGCTGTGTATATAAGAAGGAAGTGTGGAAATAAGCAACTGTCATCATCCACGTATCTAAGTGTAGCTGAACCTTTTCTTGAACAGTTTGCAAAACGTAGTCCACAGAACCAAGCACTGATAGGTTCTGCTGGTAATTTAGTTAGGACTGAAGATTTCTTGGCCATTGTTGAGGGAGGCCAGGACGAAGAAGGTGATCTTGCGGCAGAGCGGGAGATAGCACTGCCAGGGCCTAATATCTCAGTCAAGGACACAGTTCCAAAATATGAAGGGTTGATTGTATTCTTTCCAGGAATACCTGGTTGTGCTAAGTCTGCCCTTTGCAAAGAATTGCTAAATGCCCAAGGAGGACTAGGAGATGATCGACCAGTTCATAGTCTCATGGGTGATCTGATTAAAGGAAAATATTGGCAGAAAGTGGCTGATGAACGCAGAAAGAAACCTAATTCTATAGTGCTTGCTGACAAGAATGCCCCAAATGAAGAAGTTTGGAAACTGATAGAAGACATGTGTCACAAAACCAGGGCATCTGCTGTACCAGTTGTGCCTGAATCTGAAGGAACTGATTCAAATCCATTTTCTCTTGATGCACTAGCTGTTTTCATGCTTCGTGTGCTTCAAAGAGTCAATCATCCGGGAAATCTTGACAAAGCATCTCCAAATGCTGGCTATGTGCTGCTAATGTTTTATCATCTATATGAGGGCAGGAGCCGTAAAGAGTTTGAGGGTGAATTAATTGAGCGTTTTGGCTCACTTGTCAAGATGCCACTATTGAGATCTGATAGGAACCCCCTTCCTGAGGCAGTGCAGTCCATTTTGGAGGAAGGAATTAGTCTATATAAACTTCACACTAATAGACATGGAAGATTAGAGTCCACCAAAGGATCCTACGCAAAAGAATGGATAAAATGGGAGAAACAGTTACGGGATATTCTTTGTGGAAATGCTGAGTATTTTAATTCTATTCAGGTTCCATTTGAGTTTGCTGTCAAGCAAGTGTTGGAACAATTGAGAAACATTGCCAAGGGAGATTACACACCACCAGATACTGAAAAGAGGAAATTTGGTACCATAGTTTTTGCTGCTCTCAGCATGCCAGTTGCTGAAATTCAACGCGTCCTTAATAGATTGGCCCAGAGTAATCCCAAGATTGACGTATTCCTTAAAGACAAACATTTAGAGAATTTTAATCGAGCTCATTTGACTCTTGCCCACAAGAGAAGTCATGGCATCAAAGCTGTAGCTGATTATGGTATCTATCTTAATAAAGAGGTGCCAGTGGAGTTGACAGCACTGCTCTTCTCGGATAGAACAGCTGCATTTGAAGCTTGTCCCGGCTCAGTGGAAGGTGAGAAGATAGTTTCAAAAAATGCGTGGCCTCACATTACCTTATGGACGGCTGAAGGGGTTGCAGCCAAGGAGGCCAACATGTTACCACAGTTGCTTGCAGAGGGAAAAGCAAATCGGATTGACTTCAATCCTCCCATCAAGATATCTGGCACTGTTGACTTTTATTGA 3483 0.4195 MSAPQRFLCTLSHAIPLSSPISTFKSRKFLFLPFAHSYRTLTPFLSPMPRNQRSDAHVERRWQEKAKTEGQLSAVGDAAATAAETVTNKLAGMNIGENSGKTGGQDLIAIWKPKSYGTASGGTVTEVENGAGVEASVASTQKSSGSGLSKIFRGNLLENFTVDNSTFTRAQVRATFYPKFENEKSDQEVRTRMIELVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNIYTAVGVFVLGRMFREAWGTEASKKQAEFNNFLERNHMCISMELVTAVLGDHGQRPQEDYAVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSTRKSATSFFAAYDALCEEGTATSVCTALDEIADISVPGSKDHVKAQGEILEGLVARLVSHESSNHIEKILKEFPPPPVDGVALDFGPSLREICAANRSDEKQQIKALLDSVGGSFCPDYSDWFGTDAADYHSRNADRSVLSKFLQAHPSDYSTKKLQEIVRLMREKRYPAAFKCYHNFHKVDAMSSDSLFYKMVIHVHSDSAFRRYQKDMRLKPGLWPLYRGFFVDINLFKANKEKAAEISKNSVNEFGNGSSEKDDFADEDANLMVKLKFLTYKLRTFLIRNGLPILFKEGPGAYKAYYLRQMKIWGTSSAKQRELSKMLDEWAVYIRRKCGNKQLSSSTYLSVAEPFLEQFAKRSPQNQALIGSAGNLVRTEDFLAIVEGGQDEEGDLAAEREIALPGPNISVKDTVPKYEGLIVFFPGIPGCAKSALCKELLNAQGGLGDDRPVHSLMGDLIKGKYWQKVADERRKKPNSIVLADKNAPNEEVWKLIEDMCHKTRASAVPVVPESEGTDSNPFSLDALAVFMLRVLQRVNHPGNLDKASPNAGYVLLMFYHLYEGRSRKEFEGELIERFGSLVKMPLLRSDRNPLPEAVQSILEEGISLYKLHTNRHGRLESTKGSYAKEWIKWEKQLRDILCGNAEYFNSIQVPFEFAVKQVLEQLRNIAKGDYTPPDTEKRKFGTIVFAALSMPVAEIQRVLNRLAQSNPKIDVFLKDKHLENFNRAHLTLAHKRSHGIKAVADYGIYLNKEVPVELTALLFSDRTAAFEACPGSVEGEKIVSKNAWPHITLWTAEGVAAKEANMLPQLLAEGKANRIDFNPPIKISGTVDFY 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2540 1160 PANTHER TRNA LIGASE 1 109 1144 IPR038837 GO:0003972|GO:0006388
Ssu3g2540 1160 PANTHER TRNA LIGASE 1 109 1144 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2540 - - gmx:100815563 2147.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2540 3 77995326 78026710 Ssu3g2540 3 77995326 78026710 ECH