Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2538 ATGGCCGAAGCATCTTCTTCCTCGGAGGACCACAATCATCGTCATATTCCCATCGAAATTATCAGCGACGACGAAATGGCTCTCATTGAAGCCGCTCTTGCTTTCGCTTCCACTCGTTCGTTCTCTGCCATTCGTTCTTCTTCACCGCCGCACTTTCACGCAAATGCCTTATCCGTCACCGTTCTATCGAAACGAAGGTTGTCAAGTGGCGGTGATATTGAGGACTTGCCCACCCGCAAGAAAAAATCCACTCTTTCTGACTCCTTTCTTCACCGCTTCAGGAAGAAACGGGGCTTGTCCGTCACCGATCTTACGTCTACGGAATGGTGCCCCAAACAAATGGAATTTTCTCTCCTTCTTGGAGGGCGAAAGGTCAATCAAGTAATGAGAGTTGGCATTGCTCGCCATGCAAAGCTTGAGGAAGAGGTTATAAAACGGGTGGAAGTGAAGGTCAAATCACAAGAAGATTATTGGGCCCTgaagtttcttaattttataaatggtgtaaatcaattattatttgaagGATTAACTCGTGAACTACCAATAATAGGCTTTGCAGAAGATATATGGATGGTCGGAGTGATTGATGAGATTCGGATGCCATTAACAGAAAATGATCATAATCCAATACTAATTGACACAAAGACTCGTGCTCGAGATACACTTCCTGCTGAACCGCAACGAAGAAATGGAAGGCTTCAATTGATGTGCTACAAGTATTTGTGGGACAATTTAGTTGCTGATGATTTCCCttctaaattctttttcacttattttgGCTTAAACCCTCAACATAATCTATGTGAAGATCTGAAAGTGATAAGTGCTGACTCTGGATTTTCTGCTTCGACCCTGGATGATGTGGTGAGATATTACAGAAATACATGCAGGATGCTGGCCCCTGCTCATGATCAGCTCTTATTGAGATATGAGTATCAGAAAGATCATTCGCTGCTTGGTGAAGATAAATTTGCATATGATTCTGACTGGCTAAAGAATCAAATTCGTTCTTGTCTTGAGTTTTGGCTTGGAGAACGAGAAGCCGCTTGCACTCCTGAGGAGGAGCGCTGGAAATGTCGATACTGTCAATTTGGCACTGTCTGTCCGGCATACACTGATAGTAAAGGAACGGTGGCACCTAAAAGCATTGATTCAAATATCAAAGAGGGCTAG 1176 0.4192 MAEASSSSEDHNHRHIPIEIISDDEMALIEAALAFASTRSFSAIRSSSPPHFHANALSVTVLSKRRLSSGGDIEDLPTRKKKSTLSDSFLHRFRKKRGLSVTDLTSTEWCPKQMEFSLLLGGRKVNQVMRVGIARHAKLEEEVIKRVEVKVKSQEDYWALKFLNFINGVNQLLFEGLTRELPIIGFAEDIWMVGVIDEIRMPLTENDHNPILIDTKTRARDTLPAEPQRRNGRLQLMCYKYLWDNLVADDFPSKFFFTYFGLNPQHNLCEDLKVISADSGFSASTLDDVVRYYRNTCRMLAPAHDQLLLRYEYQKDHSLLGEDKFAYDSDWLKNQIRSCLEFWLGEREAACTPEEERWKCRYCQFGTVCPAYTDSKGTVAPKSIDSNIKEG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2538 391 Pfam Exonuclease V - a 5' deoxyribonuclease 89 202 IPR019190 GO:0045145
Ssu3g2538 391 Pfam Exonuclease V - a 5' deoxyribonuclease 206 271 IPR019190 GO:0045145
Ssu3g2538 391 Pfam Exonuclease V - a 5' deoxyribonuclease 299 369 IPR019190 GO:0045145
Ssu3g2538 391 Gene3D - 79 371 IPR011604 -
Ssu3g2538 391 PANTHER EXONUCLEASE V 5 375 IPR019190 GO:0045145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2538 K17815 - gmx:100792136 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2538 3 77983437 77987057 Ssu3g2538 3 77983437 77987057 ECH