Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2535 ATGGGTTCTGTAGCTGAAACGGAGAGAACTTTGTACCCGTATGTAACCGGATCCTCCGTGGTCGCCATCAAATACAAAAATGGGATTCTCATGGCTGCTGATATGGGAGGTTCCTATGGGTCTACCCTGCGATACAAGAGTGTTGAGCGTGTAAAGCCTATTGGGAAACATTCCCTTCTTGGTGCCAGTGGGGAAATAAGTGATTTTCAGGAGATTCTGCTCTACCTTGACAAGCTTATTCTTAATGACAACATGTGGGATGATGGGAATTCTCTAGGGCCTAAGGAGGTGCACAACTATTTAACTCGAGTTATGTATAACAGGCGTAACAAGTTCAACCCTTTGTGGAACAACCTTGTACTTGGGGGTGTGAAGAATGGACAAAAGTACCTTGGCATGGTTAACATGAttggaattaattttgaagacaATCATATAGCCACTGGGCTGGGAAATCATCTTGCTAGGCCAATTCTCCGTGATGAGTGGCATGAAAATTTGACCTTTGAAGAAGGCGTCAAGTTGCTGGAAAAATGCATGCGTGTGCTTTTATATCGTGATAGATCTGCGGTCAACAAGATACAGATAGCTAAAATGACCGAAGAAGGTGCTACTTTGTTCCCGCCATTCTCATTAAAAACATACTGGGAGTTCTCTGCTTTCAAGAATCCAACAGTGGGTGCTGAAGGTTCGTGTTACACTCAATTCCCTGTCCCATTTGCACCCTTTAATTCCCACTATTCAACGAAGGCTCCTTCAAGATCTTACAGAAGACGAGCTCGAAAGAGGTTGTTAAAGTCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCCCCAAGGTTCACTCCTGAAGAACTCTGCAATGTGATTGCTCATCAAAATGACCCTTTAGTTTGCTTAGAACTGTTTCACTGGGCTTCTCAGCAGCCCCGGTTTCAGCACGACATGTCCACGTTTCATGTCACCATAAAGAAGCTTGGTGCTGCAAAGATGTACCAAGAAATGGATGACATTGTGAACCAATTGCTTGCAGTTCCTTTTATCGGTTCGGAGGCATTGTTCAACAcggttatatattatttcactCAGGCACGGAAGTTGACTAGAGCTGTCAATGTGTTTAAGCACATGAAGAGTAGTAGTAGGAATAATTTGAATTGCTGTTTTAGGCCTTCTGTTAGGAcctataatattctttttgcCGCATTTTTGGGTAGAGGGAGCAACTCCTATATAAACCATGTGTATATGGAAACAATTAGGTGTCTGTTCAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTATGTGCTATCTCTTCATGTTAATGATGCATTGAGGATATTTCATCAGATGGGTGTGGTTTATGATTGCCTGCCCAACACGTTAACATACGATTGCTTGATTCACGGCTTGTGTGCCCAAGGCAGAACAAATAATGCCAAAGAATTATGTTATGAAATGAAGGCCAAAGGTTTTGTTCCAAGTAGTAAATCTTATAACTCGCTTGTCAATTCTTTGGCACTCGGTGGGGAGATTGAGGAAGCAGTAAATTATCTATGGGAGATGACTGATAAGCAAAGGTCAGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACGAGGAACGATTCAGGAGGGCATGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGGAATTCATTTCAACAGCATCCTTTCTATCATCCCTCTTCTTTTCCACAATCACCTTGCCCTCTTCTTGGGCTGTTGGATGATAGGAGGGAGGCTGGTCAAACAGCCCAAGAAGCTGAACATGCTGAGACTAATGTTGACAATGAAGGCCTGAATCAAGTGCCTCAAAAGCTGAGCATGCTGAGGCTAATGTTGACAATGAAGGCCTGA 2001 0.4203 MGSVAETERTLYPYVTGSSVVAIKYKNGILMAADMGGSYGSTLRYKSVERVKPIGKHSLLGASGEISDFQEILLYLDKLILNDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNNLVLGGVKNGQKYLGMVNMIGINFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQIAKMTEEGATLFPPFSLKTYWEFSAFKNPTVGAEGSCYTQFPVPFAPFNSHYSTKAPSRSYRRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPEELCNVIAHQNDPLVCLELFHWASQQPRFQHDMSTFHVTIKKLGAAKMYQEMDDIVNQLLAVPFIGSEALFNTVIYYFTQARKLTRAVNVFKHMKSSSRNNLNCCFRPSVRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCLPNTLTYDCLIHGLCAQGRTNNAKELCYEMKAKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYRTVLDEICRRGTIQEGMRFLQELQEKDLVDGHAYRKLLYVLEDDYGNSFQQHPFYHPSSFPQSPCPLLGLLDDRREAGQTAQEAEHAETNVDNEGLNQVPQKLSMLRLMLTMKA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2535 666 ProSitePatterns Proteasome beta-type subunits signature. 21 68 IPR016050 GO:0005839|GO:0051603
Ssu3g2535 666 Pfam PPR repeat family 477 525 IPR002885 -
Ssu3g2535 666 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 231 603 - -
Ssu3g2535 666 Gene3D Tetratricopeptide repeat domain 293 470 IPR011990 GO:0005515
Ssu3g2535 666 Gene3D Tetratricopeptide repeat domain 475 596 IPR011990 GO:0005515
Ssu3g2535 666 ProSiteProfiles Proteasome beta-type subunit profile. 17 199 IPR023333 -
Ssu3g2535 666 Pfam PPR repeat 445 469 IPR002885 -
Ssu3g2535 666 Pfam PPR repeat 361 387 IPR002885 -
Ssu3g2535 666 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 14 228 IPR029055 -
Ssu3g2535 666 PANTHER ATPASE EXPRESSION PROTEIN 3 231 603 - -
Ssu3g2535 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Ssu3g2535 666 Pfam Proteasome subunit 16 198 IPR001353 GO:0005839|GO:0051603
Ssu3g2535 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Ssu3g2535 666 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 219 IPR029055 -
Ssu3g2535 666 CDD proteasome_beta_type_4 16 209 IPR016295 -
Ssu3g2535 666 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Ssu3g2535 666 TIGRFAM PPR: pentatricopeptide repeat domain 481 513 IPR002885 -
Ssu3g2535 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2535 Ssu-Chr3 77953773 77961328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2535 341 580 Glycosyltransferase AT1G05670 30.000 3.58e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2535 - - gmx:102666460 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2535 3 77953773 77961328 Ssu3g2535 3 77953773 77961328 ECH