Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2532 ATGCATAGGATCGACACCGCAAGGTCCATTCTTTCTGCGCTTTTCAGAAGCAAATCTCAGCCTCACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACAAAACTCAGATACAGTTTAAAGAAAGTGTTGCTCAGTTTGCAACGGAAAATATTGCCCCTCATGCTTCAAAAACAGACCACACGAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACTGCACCAgAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGATCTGTTGGTCTTTCTTATGGTGCGCATTCAAACTTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGCTCAGAAACAGAAATATTTACCAAAGCTTATTTCAGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTACATACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATCGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTGGGTATTATGCAGGCATGTCTTGATGTTGCCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAGGTCTTATGTGTATTCCGTAGCTCGGGACTGTGACAATGGAAAAATTGACCCAAAGGACTGTGCTGGAGTTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCCATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCTACTGGTCGTCTCCTGAGAGATGCCAAACTCTACGAGATTGGGGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGGCGTGAGCTCTTCAAGGAGCAATGA 1233 0.4453 MHRIDTARSILSALFRSKSQPHSAAFSTSLLFDKTQIQFKESVAQFATENIAPHASKTDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPAQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYILNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVALPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDNGKIDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2532 410 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 406 IPR009075 GO:0016627
Ssu3g2532 410 PIRSF PIGM 27 135 - -
Ssu3g2532 410 PIRSF PIGM 157 410 - -
Ssu3g2532 410 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 408 IPR036250 GO:0016627
Ssu3g2532 410 Gene3D - 150 262 IPR046373 GO:0016627
Ssu3g2532 410 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Ssu3g2532 410 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 1 410 - -
Ssu3g2532 410 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Ssu3g2532 410 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 365 384 IPR006089 GO:0003995
Ssu3g2532 410 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Ssu3g2532 410 Gene3D - 263 406 - -
Ssu3g2532 410 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Ssu3g2532 410 CDD IVD 32 408 IPR034183 GO:0003995
Ssu3g2532 410 PANTHER ACYL-COA DEHYDROGENASE 1 410 - -
Ssu3g2532 410 Pfam Acyl-CoA dehydrogenase, N-terminal domain 35 147 IPR013786 GO:0016627|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2532 Ssu-Chr3 77917455 77924257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2532 1 410 Acyl Lipid Metabolism Gene Families AT3G45300 83.902 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2532 K00253 - gmx:100794259 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2532 3 77917455 77924257 Ssu3g2532 3 77917455 77924257 ECH