Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2512 ATGCCATCAATCAAAGCTTCTTCTCAACTAGACACCCACGTTGCTACAGCTAAATTGATTGCAAATGCTCTCTCAATGTCGAATAAGCGCGCGAGTCTTAAATCACGGAGATGGGTGGAAGAAAGTGGAGCATCTTGGTGGCCCTCTTCATCTTACTTATTGCTATGGAAGCCGCCATTGCTCAAGGTCAAGGTCAAGGTCAATGGCAATGGCAATGGCAATGATAATGGTAATGACAATGGCAATGGGAAGGGTGAGGATAATGATAATGGAAAGGGTAAGGGAaaggagaagaaggagaaaaaggaaaaagagaaaaagccGAAAAAGCAACATGATGAAGCCTCAAATTATGACAAGTTGTCAACTCTGCCGACGGGTCAAGAACGAGGATTCTGCAGAACAAACACTACCTGTGAGTTTAAGACCATCGTGTGTCCAACCGAGTGCGCAAAGAGGAAGCCCAAGAAGAACAAGAAGCAGAAGGCATGCTTCATTGACTGCAGCAGCAGCACATGTGAAGCCACTTGCAAGATTAGAAAAGCCAAATGTGATGGGTACGGTGCTCTGTGTTATGATCCTCGTTTTGTGGGTGGTGATGGTGTGATGTTCTACTTCCACGGTGCCAAAGGGGGAAATTTTGCCATTGTTTCTGATGATGAGTTCCAAATCAATGCTCACTTCATTGGTACTAGACCACAAGGAAGGACTCGTGACTACACATGGGTGCAAGCACTTGCTGTCATGTTTGACACACACACTCTTGTCCTTGCAGCCAATAGAGTGTCTCACTGGGATGACAACGTTGACTCTCTCACAGTAAAGTGGGATGGTGAACTAGTCAACGTCCCCACTGATGGAGAGGCTGAATGGAGGGCCAATGGTGATGAAAGAGAAGTGGTTGTGGAGAGAACCGATGAGACCAACAGTGTGAGAGTGACAGTTTCAGGTTTGGTTGAGATGGACATTAGTGTGAAGCCCATTGGAGAGCAAGAAAACAAGGTTCACAATTACCAGTTGCCTCCAGATGATGCTTTTGCTCATTTAGAGACGCAGTTCAGATTTAAGAAAAGTACTGATAATTTTGAAGGAGTTTTGGGTCAGACTTATAGGCCAGGGTATGTTAGCCCTGTCAAGAGAGGGGTTCCTATGCCAATGATGGGTGGGGAGAACAAGTACcagactctctctctcttttcaacaTCATGCAACCTATGCAGCTTCGAGAGGCCCTCCGGGATAGCAAGCGCCGAAGGACTAGTTTCTCAGTATTGA 1275 0.4408 MPSIKASSQLDTHVATAKLIANALSMSNKRASLKSRRWVEESGASWWPSSSYLLLWKPPLLKVKVKVNGNGNGNDNGNDNGNGKGEDNDNGKGKGKEKKEKKEKEKKPKKQHDEASNYDKLSTLPTGQERGFCRTNTTCEFKTIVCPTECAKRKPKKNKKQKACFIDCSSSTCEATCKIRKAKCDGYGALCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDEFQINAHFIGTRPQGRTRDYTWVQALAVMFDTHTLVLAANRVSHWDDNVDSLTVKWDGELVNVPTDGEAEWRANGDEREVVVERTDETNSVRVTVSGLVEMDISVKPIGEQENKVHNYQLPPDDAFAHLETQFRFKKSTDNFEGVLGQTYRPGYVSPVKRGVPMPMMGGENKYQTLSLFSTSCNLCSFERPSGIASAEGLVSQY 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2512 424 MobiDBLite consensus disorder prediction 67 123 - -
Ssu3g2512 424 MobiDBLite consensus disorder prediction 85 117 - -
Ssu3g2512 424 Pfam Root cap 352 408 IPR009646 -
Ssu3g2512 424 MobiDBLite consensus disorder prediction 69 84 - -
Ssu3g2512 424 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 67 414 - -
Ssu3g2512 424 PANTHER ROOT CAP/LATE EMBRYOGENESIS-LIKE PROTEIN 67 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2512 Ssu-Chr3 77583567 77585937 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2512 - - gmx:100789697 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2512 3 77583567 77585937 Ssu3g2512 3 77583567 77585937 ECH