Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2509 ATGACAAAGGGAATACGTTTGGATTGTTCCGTGCAGGAGGATGAAGAGAAAGTGAATAATAGCTTTGTGGAATTGGATACAAAGCAGGGAGTGAATGATGGTTTTCCTAGAATTGGACCAAATGATTCGCTTCTCCCTGGCCTTTTTGATGATGTTGCGCTGAATTGTCTTGCTTGGGTTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAACGATACAACTTGCTGATTGGGAGCGGGTATCTTTCCGGGTTGAGGAAGAAGTTGGGGATTGTGGAGCTAGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGGTGGGTGGCATTTGACCTCAAGAGGAATAGATGGATAGCATTACCTAGGATACCTTGTGATGAGTGTTTTAATCTTGCAGACAAGGAGTCCTTGGCTGTGGGGGGCGAATTGTTGGTTTTTGGTCGGGAATTGATGGAATTTGCCGTTTGGAAGTACAGCTTGATTTGCCGTGGTTGGGTGAAGTGTCAGGAGATGAACCGACCTCGTTGCTTGTTCGGATCTGGCAGTCTTGGTTCAATTGCTATTGTTGCGGGTGGAAGTGATAAATATGGAAATGTTCTTGAATCGGCGGAGTTGTATGACTCTTCTTCAGGTACATGGGAACTGTTGCCGAACATGCATACACCACGCAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCCATGTGATTGGTGGTATGTCAGGTCCTTTGGTTTCATTGACTTGTGGGGAGGAGTATGATCTTAAGACGAGAAATTGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGGGGCTTCTCAGGCACCTCCACTTGTGGCAGTTGTGGATAATCAGTTGTATGCAGTTGAGCATCTTACCAACATGGTGAAGAAATATGACAAGGAACAGAACACCTGGAGTGAATTGGGAAGGCTTCCAGTACGGGCCGATTCTTCTAATGGATGGGGCCTGGCTTTCAAGGCTTGTGGAGAGAAACTTCTGGTTGTGGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATTGTACTGAATTCATGGTGTCCTAGGACGGGGTCAGGAATGGAACCATAG 1101 0.4514 MTKGIRLDCSVQEDEEKVNNSFVELDTKQGVNDGFPRIGPNDSLLPGLFDDVALNCLAWVSRSDYASLACINKRYNLLIGSGYLSGLRKKLGIVELEHLVYLVCDPRGWVAFDLKRNRWIALPRIPCDECFNLADKESLAVGGELLVFGRELMEFAVWKYSLICRGWVKCQEMNRPRCLFGSGSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFHVIGGMSGPLVSLTCGEEYDLKTRNWRKIEGMYPYVNGASQAPPLVAVVDNQLYAVEHLTNMVKKYDKEQNTWSELGRLPVRADSSNGWGLAFKACGEKLLVVGGQRGPEGEAIVLNSWCPRTGSGMEP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2509 366 SUPERFAMILY Kelch motif 108 347 IPR015915 GO:0005515
Ssu3g2509 366 Gene3D - 101 362 IPR015915 GO:0005515
Ssu3g2509 366 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 32 362 - -
Ssu3g2509 366 Pfam Kelch motif 176 221 IPR006652 GO:0005515
Ssu3g2509 366 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 32 362 - -
Ssu3g2509 366 SMART kelc_smart 188 235 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2509 Ssu-Chr3 77523304 77524404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2509 48 267 Miscellaneous Gene Families AT4G33900 27.111 3.68e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2509 - - gmx:100792139 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2509 3 77523304 77524404 Ssu3g2509 3 77523304 77524404 ECH