Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2508 ATGACGCAGGGGAAGATAATCGCAAAACAAGGATCAAGAAACATCACAAGGAACAGATTTGAGAAGAGGGACATCATAAACACTATGCCGAATGAGATCATTGGGAATATTTTATCTCGTTTGACAGTGAAAGAAGCTGCTAGGACCAGCGTGCTGTCAACTGCATGGAGATATCAATGGACCTATTTCTCTGGGGTCTTGGACTTTGATCATTCACTTAGGACTTATCTGTTACGTCGAGAACATGTTGGACTTTTGACTAAGTGCATGGTTTTTGTTTGTGAGTGGGAGAGGTTCATGACCCATTTGGAACATGTGATGAAAACACTGAAAAGCCCCTCCATGCAAGGACTCAGAATTTGCATGGATTTGGGTAACCCTTGGAAGGTAGCTGAATGGGTTAAGTTTGCTGCTGAGAAGAATGTTCGAACGTTGGACCTGGATTTTTCATATAACTTCACAGAACCATTCTTTGAAGTAAGTGACACCATTCGTAATGTCCTGTCACCAAAGAGTTTTGAAATGAAGTCACTGTGTGTCCTGCGTTTGGCTTCTGTGGACGTGAGTGGTGAGACCATTCAGTGTTTTCTAGCATCTTGTCCATTGCTTGAAACACTATGTGTCATAGAATCGCAACTCCTTGGTCGCTTGAAAGTTTGTGGTCCAGCACTGAGGCTGAAGCATTTGGAGTTGGTTGAGTGCAACATTCTGTATCTTGACATCTATGCTGAAAATCTCATGACATTTAGGTACTCTGGAGATTATGGAAAGTTTAACTTTGAAAGTTTCCCAAGCCTTGTGGAAGCCTCCTTTGGAGGACGGTATGCTAGTTATCTGCAATCAAACATGGACGATGCTGATTTTTATGGAGTACTGTCGCAGGTTCATGTTCTGAAATTGGAACTGTCCGCATATCATCAGGGAACTCTTGAAGGCCTGCCTGTGTTCGGTAATGTGAAGCAGTTGGAACTGGAAATTCCTCACGTGTGTGGAGCGGAGCTTGATTGTCCTGTTTCTTTACTAAGTGCATTCCCTTCAATATGTGTGCTTAAGATTAAGTTCCTGAGGTCCAATCTTGGGGAAGCGGAGCAGGAGTGGAAGGCCAGTTTGAAACATGAGTATCCAAGCCTGAGGGAGCTGGAAGTGTCAGGATACAGAAGAGATTCCAGTCAAATTGAGTTGCTGATTAGCATATTTGCTAAGGCTCCTAATCTCAACAGGATTGTTGTGGATCCCTTGTCTTCATTCTATGTGGATAGGTCACCTGATGTGAAGGCCAGGATTAGAAAAATGCGGCGCGAGTCTACCATATGGTTTGTTGATGCTCTCAAACCACATGTGCCTCCTCCGGTTGAGTTGATTGTCCTCTAA 1371 0.4369 MTQGKIIAKQGSRNITRNRFEKRDIINTMPNEIIGNILSRLTVKEAARTSVLSTAWRYQWTYFSGVLDFDHSLRTYLLRREHVGLLTKCMVFVCEWERFMTHLEHVMKTLKSPSMQGLRICMDLGNPWKVAEWVKFAAEKNVRTLDLDFSYNFTEPFFEVSDTIRNVLSPKSFEMKSLCVLRLASVDVSGETIQCFLASCPLLETLCVIESQLLGRLKVCGPALRLKHLELVECNILYLDIYAENLMTFRYSGDYGKFNFESFPSLVEASFGGRYASYLQSNMDDADFYGVLSQVHVLKLELSAYHQGTLEGLPVFGNVKQLELEIPHVCGAELDCPVSLLSAFPSICVLKIKFLRSNLGEAEQEWKASLKHEYPSLRELEVSGYRRDSSQIELLISIFAKAPNLNRIVVDPLSSFYVDRSPDVKARIRKMRRESTIWFVDALKPHVPPPVELIVL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2508 456 Pfam F-box domain 29 58 IPR001810 GO:0005515
Ssu3g2508 456 Gene3D Ribonuclease Inhibitor 129 420 IPR032675 -
Ssu3g2508 456 SUPERFAMILY RNI-like 141 408 - -
Ssu3g2508 456 PANTHER - 7 416 - -
Ssu3g2508 456 SUPERFAMILY F-box domain 22 64 IPR036047 GO:0005515
Ssu3g2508 456 PANTHER F-BOX PROTEIN-LIKE 7 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2508 Ssu-Chr3 77518782 77521076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2508 24 240 EF-hand Containing Proteins AT5G41840 28.384 5.07e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2508 - - gmx:100778140 652.514