Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2507 ATGGCGGAACCTCTCCCAAGCACTGAACTCTGTCCCTCCAAAACCCTAGGCCCAACCAACGATCACGATTCCACTTTGGAACGGCATCAAACTGCTCCACAAGACGCCCAACTCCATCCAGAAAACGACGACGTCGTTCCGACCGGGAAACGGAAGAGGGACGACGACGCCGACGAGCGTTCGCGCCATCCCCTGTGGAAGACCAGCCTCTGCTCCTACTTCCGGAGCCACAATGGCTCCTGCAACCACGGCGGCGCGTGCCGCTACGCGCACGGCGAGGAGGAGCTCCGCCCTCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCCTTGAAATCCGAGACGGGCGAAAGGTGCGCCGTCTCGGAGGGCGTGATGATGACGGAGGCCGTCGTCGACGGCGAGGCCGACGCCGGCGACGACGACGGTTGTGGCTCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGCATTTGAGGAAGTTTCTCAACCAAGAGGGTGTACCTTTTAAGCAtgctaagaaaaagaaaggtatGATGATTGGTTTTGTTACTTTTGAGGATGAAGAACAAATGAAGAGTTCAGCGAAGGATTTAGATGGAAAATCAATTGGCAACAAAAGTTTAAAGGTTGCTGATGTCATTCCTCGgtcatttgaaaagaaaagcaaCGTCAATGTTGCATCCCGTCAAGAATTAGATGAGGAGAATACAGGGGTTGATGTTCCTTCAAGTGGGACTTTTGATGCTGAAACAAATAATGATAACTTGGCAAAGACAAGAAGCGTGCGTGATGTAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAACTCTCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCCAATGGCATTCCTCTTCCTGAGTGGATTCTCAAGTCAAGGGAAATAGGTGGTCTTCCGTGCGAACTAGAGGGTATTGTTGCATCTCCAATTGTAAATGGATACCGTAACAAGTGTGAATTTTCGGTTGGATATTCTCTTGAAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAACCAGTGGACTGCCCAAATGTTTCAATTATTGCTTGCAAATATGCCGCAATCTTTCAGGAATTTCTGCAGCAGAGTGATTTACCAGTTTGGAACAGATTTAAAAATTCTGGATTTTGGCGTCAATTTACGGTCCGAGAAGGGAGAACAAATGGGAATGTTGTTGATGCTGAGACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTCGCTCAGGCATTTGTTGCCAGATCTACTTCGCATTGTCCAACATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCAGCTGATGCACCACTGCATTTACTTCCCATTCCTAAAGCAGTTGGCGATCCTGACATGGATGAAAAAGATAATGCCATGGATACAAGAATCCATGATTATATCAACAATCTCCAGTTCTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGCGGGACAGGAACAATTGGCTTGACATTAGCACATCGAGTCGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAGATTTATATGTGCGAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTAAATGTGACCAAGGAACAAATTGATTATCCTAACATCTCTGGAAGTGGCCATGGCATTCCTGAGGATAATGCCCACCCAGAGCCTGAAAATGGTGAAATGGTGTCTCATTGTTCAGAAAATAACAATGCAGAAGTTGGAAGTGATGCTCAGAAGGGTAGCACTGCCGAACAAGTTGATGGGACCTCTAAACAGGCAGAGGACGTGATGGGATCTCAGTTAAGGGATAGCGTAAATGTGTCTAAGGAACAAAGTGATGATCCAAATATCTCTGGAAGTGGCAATAACATTCCTGAGGATAGTACCTGCCCAGAGCCTGAAAACGGCAAAATTGAATCTCGGTCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAGCACTTCTGAAAATGGGAATGCTTCCATGCCACAGTTCAAAaatgttgttgctattgttgatCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCACGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCccataaaaattgagaaaggaAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2685 0.4566 MAEPLPSTELCPSKTLGPTNDHDSTLERHQTAPQDAQLHPENDDVVPTGKRKRDDDADERSRHPLWKTSLCSYFRSHNGSCNHGGACRYAHGEEELRPRPDNTWDPTSERAKKALKSETGERCAVSEGVMMTEAVVDGEADAGDDDGCGSNHALSKCLVHLPRKWSSEHLRKFLNQEGVPFKHAKKKKGMMIGFVTFEDEEQMKSSAKDLDGKSIGNKSLKVADVIPRSFEKKSNVNVASRQELDEENTGVDVPSSGTFDAETNNDNLAKTRSVRDVVTPLAHMAYADQLEQKKNSLMQILKKLTRNARKACPNGIPLPEWILKSREIGGLPCELEGIVASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEPVDCPNVSIIACKYAAIFQEFLQQSDLPVWNRFKNSGFWRQFTVREGRTNGNVVDAETFGGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFVARSTSHCPTLPLTALVVQDHQGISNVAPADAPLHLLPIPKAVGDPDMDEKDNAMDTRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVRFICAKAEDVMGSLLREYLNVTKEQIDYPNISGSGHGIPEDNAHPEPENGEMVSHCSENNNAEVGSDAQKGSTAEQVDGTSKQAEDVMGSQLRDSVNVSKEQSDDPNISGSGNNIPEDSTCPEPENGKIESRSENNNAEVGSEVQKGSTSENGNASMPQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTQHCELVMLLER 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2507 894 MobiDBLite consensus disorder prediction 674 741 - -
Ssu3g2507 894 Coils Coil 287 307 - -
Ssu3g2507 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 221 IPR000504 GO:0003723
Ssu3g2507 894 MobiDBLite consensus disorder prediction 754 777 - -
Ssu3g2507 894 Gene3D - 157 226 IPR012677 -
Ssu3g2507 894 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
Ssu3g2507 894 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Ssu3g2507 894 ProSitePatterns RNA methyltransferase trmA family signature 1. 789 821 IPR030390 -
Ssu3g2507 894 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Ssu3g2507 894 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Ssu3g2507 894 CDD RRM_SF 157 222 - -
Ssu3g2507 894 Gene3D - 348 548 - -
Ssu3g2507 894 Gene3D Vaccinia Virus protein VP39 751 894 IPR029063 -
Ssu3g2507 894 MobiDBLite consensus disorder prediction 237 266 - -
Ssu3g2507 894 Gene3D - 58 99 - -
Ssu3g2507 894 MobiDBLite consensus disorder prediction 1 61 - -
Ssu3g2507 894 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 894 IPR045850 -
Ssu3g2507 894 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 81 894 - -
Ssu3g2507 894 SUPERFAMILY RNA-binding domain, RBD 160 232 IPR035979 GO:0003676
Ssu3g2507 894 Gene3D Vaccinia Virus protein VP39 549 661 IPR029063 -
Ssu3g2507 894 Pfam Methyltransferase domain 575 633 IPR025714 -
Ssu3g2507 894 MobiDBLite consensus disorder prediction 44 61 - -
Ssu3g2507 894 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 277 894 IPR010280 GO:0006396|GO:0008173
Ssu3g2507 894 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 279 894 IPR029063 -
Ssu3g2507 894 MobiDBLite consensus disorder prediction 650 777 - -
Ssu3g2507 894 CDD AdoMet_MTases 577 631 - -
Ssu3g2507 894 Pfam tRNA (Uracil-5-)-methyltransferase 781 830 IPR010280 GO:0006396|GO:0008173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2507 K15332 - gmx:100777601 1536.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2507 3 77499992 77505646 Ssu3g2507 3 77499992 77505646 ECH