Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2505 ATGGCTTGCAGTGTGGAAAATTGTGATGTGGGTAGCGGGGTGGTTCATCCAGCCACAGATGCTTATGCTGGAGAGGCAGTTGAAGCTTTGAAAGCTGGGAAAGTCATTGCAGTGCCCACTGATACACTCTATGGATTTGCTTGTGATGCTTGCTCATTGGAAGCGGTTAACAGGATTTATGAGATTAAAGGCCGTAAACATACAAGCCCTCTGGCTATTTGTGTCGGTGACATATCAGATATATCCCGTTTTGCTGTCACTGACCATTTACCTCATGGTCTGCTTGATTCCCTCCTACCTGGGCCTGTTACAGTTGTACTAAAACGAGGAGAGTCAAGTGTTCTTGAACGATCTTTGAACCCAGGATTTGATAGTGTAGGAGTTAGAGTGCCTGATTCCAATTTCATCAGGATCATTGCCCGTGGTTCAGGAACTGCCCTAGCCCTTACCAGTGCAAACCTAAGTGGACAGCCAAGTAGCGTTTCCATCAAAGATTTTGAGAACCTCTGGGAACATTGTGCTTTTGTTTATGATGGTGGTTTGATTCCATCAGGTCGTGCAGGTTCAACAGTTGTGGACCTCACTACACCACACAAATACAGGATACTTAGACCTGGAAGTGCAAAGGAAGAGACAATTGCCATCTTGGAGAAGCATTCTTTGGTTGAGGCAGTGACCACTTAA 684 0.4561 MACSVENCDVGSGVVHPATDAYAGEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDISDISRFAVTDHLPHGLLDSLLPGPVTVVLKRGESSVLERSLNPGFDSVGVRVPDSNFIRIIARGSGTALALTSANLSGQPSSVSIKDFENLWEHCAFVYDGGLIPSGRAGSTVVDLTTPHKYRILRPGSAKEETIAILEKHSLVEAVTT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2505 227 TIGRFAM TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 25 214 IPR006070 GO:0003725
Ssu3g2505 227 Pfam Telomere recombination 28 206 IPR006070 GO:0003725
Ssu3g2505 227 Gene3D DHBP synthase 15 219 - -
Ssu3g2505 227 PANTHER YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL 5 224 - -
Ssu3g2505 227 ProSiteProfiles YrdC-like domain profile. 20 208 IPR006070 GO:0003725
Ssu3g2505 227 PANTHER SUA5 5 224 - -
Ssu3g2505 227 SUPERFAMILY YrdC/RibB 23 213 IPR017945 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2505 K07566 - gmx:100791087 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2505 3 77466883 77469157 Ssu3g2505 3 77466883 77469157 ECH